Factsheet for TraesCS6A01G192800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G183500.1	Wheat	plastid	99.26	99.55
TraesCS6B01G224800.2	Wheat	plastid	98.81	98.67
KXG30054	Sorghum	mitochondrion, plastid	89.17	89.57
Zm00001d015929_P002	Maize	plastid	88.58	88.97
Os02t0285800-01	Rice	plasma membrane	86.5	87.14
HORVU6Hr1G050160.1	Barley	plastid	67.06	84.8
GSMUA_Achr5P14760_001	Banana	plastid	78.34	77.53
VIT_08s0007g08290.t01	Wine grape	plastid	75.07	74.96
KRH71976	Soybean	nucleus	74.93	74.7
Solyc03g058190.2.1	Tomato	plastid	74.48	74.7
KRH33159	Soybean	nucleus	74.63	73.97
AT5G13650.2	Thale cress	plastid	74.18	73.96
Bra008811.1-P	Field mustard	plastid	73.89	73.89
CDY65992	Canola	plastid	73.89	73.89
CDY09816	Canola	plastid	73.89	73.78
CDX91105	Canola	plastid	73.15	73.15
CDX85635	Canola	plastid	73.15	69.63
TraesCS3A01G291600.1	Wheat	mitochondrion	37.54	37.59
TraesCS7A01G087200.1	Wheat	mitochondrion	21.81	22.07
TraesCS4A01G386100.3	Wheat	mitochondrion	21.81	22.07
TraesCS6A01G130900.1	Wheat	plastid	21.66	21.79
TraesCS7A01G288600.1	Wheat	cytosol	3.41	18.85
TraesCS2A01G234500.1	Wheat	cytosol	3.41	18.4
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	3.26	17.6
TraesCS7A01G336600.4	Wheat	mitochondrion	18.25	15.77
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	17.51	15.36
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	19.14	15.3
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	18.99	15.18
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	18.84	15.07
TraesCS3A01G232300.1	Wheat	cytosol, golgi	18.69	14.95
TraesCS1A01G027600.1	Wheat	cytosol	16.47	13.14
TraesCS5A01G370800.1	Wheat	cytosol	18.4	11.87
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	17.36	11.82
TraesCS7A01G380300.1	Wheat	nucleus	17.06	11.57
TraesCS4A01G363900.1	Wheat	plastid	9.94	10.2

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
InterPro:BipA_V	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0000302
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0010468
GO:GO:0016787	GO:GO:0031425	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF00679	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF4	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394	EnsemblPlantsGene:TraesCS6A01G192800	EnsemblPlants:TraesCS6A01G192800.1	InterPro:Transl_B-barrel_sf
InterPro:TypA_GTP-bd	TIGR:cd01891	TIGR:cd03691	TIGR:cd03710	TIGR:cd16263	SEG:seg

Description

No Description!

Coordinates

chr6A:-:263871489..263911961

Molecular Weight (calculated)

74120.2 Da

IEP (calculated)

6.892

GRAVY (calculated)

-0.264

Length

674 amino acids

Sequence
(BLAST)

001: MQMQTITLRA GPSAHRLAPP PASASSSNLS AGRCFLLRPP HSRCRRPRSI RASASLEQEV KERADSPSPS GTSSQATRRD VRNIAIVAHV DHGKTTLVDS
101: MLRQSKVFRD NQVVQERIMD SNDLERERGI TILSKNTSIT YKGTKINIID TPGHSDFGGE VERVLNMVEG ILLVVDSVEG PMPQTRFVLK KALEFGHAVV
201: VVVNKVDRPI ARPEFVVNST FELFIELNAT DEQCDFQTVY AIGLKGKAGI SADNLADDLG PLFEAILRCI PEPHIEKDGA LQMLVTSTEY DEHKGRIAIG
301: RLHAGELKRG MEVKVCTPDD ACRIGKIGEL FVYENFGRVP VESVSAGDIC AVCGINDIMI GETIADKVSG TALPTIKIEE PTVRMSFSIN TSPFVGKEGK
401: FVTSRNLRDR LYRELERNLA MKVEDGETAD TFLVSGRGTL HLTILIENMR REGYEFMIGP PKVINKTVNG KLLEPYEIAA IEVPEEYMGS VVELLGKRRG
501: QMLDMEASGP EGTSLLKYKV PTRGLIGLRN AILTASRGRA ILNTIFDSYG PWAGDISSRD QGSLVAFEGG STTSYACVNA QERGILFVKP GQDIYKGQIV
601: GIHQRPGDLA LNVCKKKAAT NVRSNKETTV VLDEPLSYSL DDCIEYIQED ELVEVTPESI RMSKNPKISK KKNN

Best Arabidopsis Sequence Match ( AT5G13650.1 )
(BLAST)

001: MELSLSTSSA SPAVLRRQAS PLLHKQQVLG VSFASALKPG GGALRFPSRR PLPRPITCSA SPSTAEPASE VKKKQLDRRD NVRNIAIVAH VDHGKTTLVD
101: SMLRQAKVFR DNQVMQERIM DSNDLERERG ITILSKNTSI TYKNTKVNII DTPGHSDFGG EVERVLNMVD GVLLVVDSVE GPMPQTRFVL KKALEFGHAV
201: VVVVNKIDRP SARPEFVVNS TFELFIELNA TDEQCDFQAI YASGIKGKAG LSPDDLAEDL GPLFEAIIRC VPGPNIEKDG ALQMLATNIE YDEHKGRIAI
301: GRLHAGVLRK GMDVRVCTSE DSCRFARVSE LFVYEKFYRV PTDSVEAGDI CAVCGIDNIQ IGETIADKVH GKPLPTIKVE EPTVKMSFSV NTSPFSGREG
401: KYVTSRNLRD RLNRELERNL AMKVEDGETA DTFIVSGRGT LHITILIENM RREGYEFMVG PPKVINKRVN DKLLEPYEIA TVEVPEAHMG PVVELLGKRR
501: GQMFDMQGVG SEGTTFLRYK IPTRGLLGLR NAILTASRGT AILNTVFDSY GPWAGDISTR DLGSLVAFED GTSTSYALAS AQERGQMFVG SGVDVYKGQI
601: VGIHQRPGDL GLNICKKKAA TNIRSNKDVT VILDTPLTYS LDDCIEYIEE DELVEVTPSS IRMCKNQKMA KKGRQ

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4K409]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.