Factsheet for VIT_08s0007g08290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71976	Soybean	nucleus	84.3	84.17
Solyc03g058190.2.1	Tomato	plastid	83.26	83.63
KRH33159	Soybean	nucleus	83.85	83.24
Bra008811.1-P	Field mustard	plastid	80.44	80.56
CDY65992	Canola	plastid	80.44	80.56
CDY09816	Canola	plastid	80.3	80.3
AT5G13650.2	Thale cress	plastid	80.3	80.18
CDX91105	Canola	plastid	79.85	79.97
GSMUA_Achr5P14760_001	Banana	plastid	79.26	78.56
KXG30054	Sorghum	mitochondrion, plastid	77.19	77.65
Os02t0285800-01	Rice	plasma membrane	76.74	77.43
Zm00001d015929_P002	Maize	plastid	76.89	77.35
CDX85635	Canola	plastid	80.3	76.55
TraesCS6D01G183500.1	Wheat	plastid	74.81	75.15
TraesCS6B01G224800.2	Wheat	plastid	75.11	75.11
TraesCS6A01G192800.1	Wheat	plastid	74.96	75.07
HORVU6Hr1G050160.1	Barley	plastid	51.26	64.92
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	38.07	38.24
VIT_14s0108g00130.t01	Wine grape	mitochondrion, plastid	23.11	22.91
VIT_07s0031g03050.t01	Wine grape	plastid	22.67	22.5
VIT_15s0021g02450.t01	Wine grape	mitochondrion, plastid	18.81	17.02
VIT_00s0323g00080.t01	Wine grape	plastid	17.63	15.35
VIT_19s0027g00760.t01	Wine grape	cytosol	18.96	15.01
VIT_04s0044g01790.t01	Wine grape	cytosol	18.81	12.33
VIT_11s0118g00720.t01	Wine grape	nucleus	17.33	11.84
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	2.22	7.11

Protein Annotations

EntrezGene:100264026	wikigene:100264026	Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870
Gene3D:3.40.50.300	MapMan:35.1	InterPro:BipA_V	ProteinID:CBI29863	ProteinID:CBI29863.3	UniProt:D7THY7
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	EMBL:FN595991	GO:GO:0000166	GO:GO:0000302
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009987	GO:GO:0010468	GO:GO:0016787	GO:GO:0031425	GO:GO:0050821
InterPro:G_TR_CS	InterPro:IPR000795	EntrezGene:LOC100264026	wikigene:LOC100264026	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF00679	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF4	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom
TIGR:TC61435	TIGR:TC64318	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf
InterPro:TypA_GTP-bd	UniParc:UPI0001983DC4	ArrayExpress:VIT_08s0007g08290	EnsemblPlantsGene:VIT_08s0007g08290	EnsemblPlants:VIT_08s0007g08290.t01	unigene:Vvi.7438
RefSeq:XP_002283552	RefSeq:XP_002283552.1	:	:	:	:

Description

No Description!

Coordinates

chr8:+:21627860..21639830

Molecular Weight (calculated)

74993.5 Da

IEP (calculated)

7.207

GRAVY (calculated)

-0.267

Length

675 amino acids

Sequence
(BLAST)

001: MEMAVAFHKP LNSRLSINPN PNSRRGLCFS SSLLFNCRLP SSPIATTPFK FPFRNSVPAP IKCSISTETA KEKKRQLMRR RDIRNIAIVA HVDHGKTTLV
101: DAMLKQAKVF RDNQFVQERI MDSNDLERER GITILSKNTS IGYKDTKINI IDTPGHSDFG GEVERILNMV EGVLLVVDSV EGPMPQTRFV LKKALEFGHA
201: VVVVVNKIDR PSARPDYVIN ATFELFIELN ATDEQCDFQA IYASGIKGKA GLSPENLADD LGPLFESIIR CIPGPRIDKD GALQMLATNI EYDEHKGRIA
301: IGRVHAGVLQ KGMDVRVCTT EDACRYARVS ELFVYEKFSR VPAETVEAGD ICAVCGIDDI QIGETIADKS SGKPLPAIKV EEPTVKMAFS INTSPFVGRE
401: GKYVTSRNLR DRLYREIERN LAMRVEDGET ADTFIVSGRG TLHITILIEN MRREGYEFMV GPPKVINKRV DDKLQEPFEI ATVEVPEEHM GSVVELLGKR
501: RGQMFDMQGV GSEGTTLLKY KIPTRGLLGL RNAILTASRG TAILNTIFDS YGPWAGDITT RDQGSLVAFE EGSTTSYALC SSQERGQMFV GPGVDVYKGQ
601: IVGIHQRPGD LSLNVCKKKA ATNVRSNKEQ TVVLDTPLDY SLDDCIEYIQ EDEMVEVTPL SIRMCKNPKL AKKTR

Best Arabidopsis Sequence Match ( AT5G13650.2 )
(BLAST)

001: MELSLSTSSA SPAVLRRQAS PLLHKQQVLG VSFASALKPG GGALRFPSRR PLPRPITCSA SPSTAEPASV EVKKKQLDRR DNVRNIAIVA HVDHGKTTLV
101: DSMLRQAKVF RDNQVMQERI MDSNDLERER GITILSKNTS ITYKNTKVNI IDTPGHSDFG GEVERVLNMV DGVLLVVDSV EGPMPQTRFV LKKALEFGHA
201: VVVVVNKIDR PSARPEFVVN STFELFIELN ATDEQCDFQA IYASGIKGKA GLSPDDLAED LGPLFEAIIR CVPGPNIEKD GALQMLATNI EYDEHKGRIA
301: IGRLHAGVLR KGMDVRVCTS EDSCRFARVS ELFVYEKFYR VPTDSVEAGD ICAVCGIDNI QIGETIADKV HGKPLPTIKV EEPTVKMSFS VNTSPFSGRE
401: GKYVTSRNLR DRLNRELERN LAMKVEDGET ADTFIVSGRG TLHITILIEN MRREGYEFMV GPPKVINKRV NDKLLEPYEI ATVEVPEAHM GPVVELLGKR
501: RGQMFDMQGV GSEGTTFLRY KIPTRGLLGL RNAILTASRG TAILNTVFDS YGPWAGDIST RDLGSLVAFE DGTSTSYALA SAQERGQMFV GSGVDVYKGQ
601: IVGIHQRPGD LGLNICKKKA ATNIRSNKDV TVILDTPLTY SLDDCIEYIE EDELVEVTPS SIRMCKNQKM AKKGRQ

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4K409]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.