Factsheet for VIT_00s1286g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
nucleus 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0538100-01	Rice	plasma membrane	87.2	47.67
VIT_00s0323g00080.t01	Wine grape	plastid	100.0	27.23
GSMUA_Achr5P13570_001	Banana	mitochondrion	91.0	26.52
KRH57341	Soybean	nucleus, plastid	93.36	25.26
Bra027021.1-P	Field mustard	plastid	91.94	25.03
CDY31838	Canola	plastid	91.94	25.03
CDY46917	Canola	plastid	91.94	25.03
KRH04069	Soybean	nucleus, plastid	92.89	24.9
Solyc08g079180.2.1	Tomato	plastid	92.42	24.78
PGSC0003DMT400012076	Potato	cytosol, plastid	92.42	24.78
AT1G62750.1	Thale cress	plastid	91.94	24.78
Zm00001d025948_P001	Maize	plastid	86.26	23.7
HORVU2Hr1G092180.1	Barley	plastid	85.31	23.59
Zm00001d002822_P001	Maize	plastid	85.78	23.54
TraesCS2B01G404600.1	Wheat	plastid	85.31	23.44
EES12566	Sorghum	plastid	85.78	23.35
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	84.83	23.31
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	84.83	23.31
VIT_15s0021g02450.t01	Wine grape	mitochondrion, plastid	44.08	12.47
VIT_19s0027g00760.t01	Wine grape	cytosol	21.33	5.28
VIT_11s0118g00720.t01	Wine grape	nucleus	19.91	4.25
VIT_04s0044g01790.t01	Wine grape	cytosol	19.43	3.98
VIT_07s0031g03050.t01	Wine grape	plastid	9.48	2.94
VIT_14s0108g00130.t01	Wine grape	mitochondrion, plastid	8.53	2.64
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	8.06	2.53
VIT_08s0007g08290.t01	Wine grape	plastid	7.11	2.22
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	0.0	0.0

Protein Annotations

Gene3D:3.30.230.10	Gene3D:3.30.70.240	MapMan:35.1	ProteinID:CCB50205	ProteinID:CCB50205.1	InterPro:EFG_III/V
InterPro:EFG_V	InterPro:EFG_V-like	UniProt:F6HDB0	EMBL:FN595597	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	InterPro:IPR014721	PFAM:PF00679	PFAM:PF03764	PANTHER:PTHR43261	PANTHER:PTHR43261:SF6
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI000210AA15	ArrayExpress:VIT_00s1286g00020	EnsemblPlantsGene:VIT_00s1286g00020	EnsemblPlants:VIT_00s1286g00020.t01	RefSeq:XP_003635538
RefSeq:XP_003635538.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:38359343..38360563

Molecular Weight (calculated)

22815.6 Da

IEP (calculated)

6.962

GRAVY (calculated)

-0.117

Length

211 amino acids

Sequence
(BLAST)

001: ISKVSEVKYV HKKQSGGQGQ FADITVRFEP IEAGSGYEFK SEIKGGAVPK EYIPGVMKGL EECMSNGVLA GFPVVDVRAV LVDGSYHDVD SSVLAFQLAA
101: RGAFREGMRK AAPKMLEPIM KVEVVTPEEH LGDVIGDLNS RRGQINSFGD KPGGLKVVDA LVPLAEMFQY VSTLRGMTKG RASYTMQLAK FEVVPQHIQN
201: ELAAKEQAVA A

Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)

001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA

Arabidopsis Description

CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.