Factsheet for Os04t0538100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
YLoc:	mitochondrion

plastid: 17189339
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	47.67	87.2
HORVU2Hr1G092180.1	Barley	plastid	95.6	48.36
Zm00001d025948_P001	Maize	plastid	95.08	47.79
TraesCS2B01G404600.1	Wheat	plastid	95.08	47.79
Zm00001d002822_P001	Maize	plastid	95.08	47.72
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	94.82	47.66
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	94.82	47.66
EES12566	Sorghum	plastid	95.08	47.35
GSMUA_Achr5P13570_001	Banana	mitochondrion	87.56	46.69
Bra027021.1-P	Field mustard	plastid	87.56	43.61
CDY46917	Canola	plastid	87.56	43.61
CDY31838	Canola	plastid	87.31	43.48
VIT_00s0323g00080.t01	Wine grape	plastid	87.31	43.48
KRH57341	Soybean	nucleus, plastid	87.05	43.08
AT1G62750.1	Thale cress	plastid	87.31	43.04
KRH04069	Soybean	nucleus, plastid	86.79	42.57
Solyc08g079180.2.1	Tomato	plastid	86.79	42.57
PGSC0003DMT400012076	Potato	cytosol, plastid	86.53	42.44
Os03t0565500-01	Rice	mitochondrion	41.19	21.0
Os01t0742200-01	Rice	cytosol, nucleus	25.39	11.86
Os01t0723000-01	Rice	cytosol, nucleus, plasma membrane	24.87	11.25
Os06t0608300-01	Rice	nucleus	23.83	9.23
Os02t0543300-00	Rice	mitochondrion	22.8	8.76
Os01t0752700-01	Rice	mitochondrion	14.77	8.47
Os03t0650700-01	Rice	cytosol	21.5	8.07
Os06t0144800-01	Rice	mitochondrion	13.73	7.99
Os02t0285800-01	Rice	plasma membrane	13.47	7.77
Os05t0467501-00	Rice	cytosol	2.85	2.41
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	0.0	0.0

Protein Annotations

MapMan:17.7.4.3	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	ProteinID:BAF15344.1
ProteinID:BAS90263.1	InterPro:EFG_III	InterPro:EFG_III/V	InterPro:EFG_V	InterPro:EFG_V-like	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0070125	InterPro:IPR014721	EnsemblPlantsGene:Os04g0538100	EnsemblPlants:Os04t0538100-01	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PANTHER:PTHR43261	PANTHER:PTHR43261:SF6	UniProt:Q0JBE3
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0000DD91CA	:	:

Description

Elongation factor G, III and V domain containing protein. (Os04t0538100-01)

Coordinates

chr4:-:26917910..26919741

Molecular Weight (calculated)

42136.6 Da

IEP (calculated)

5.362

GRAVY (calculated)

-0.196

Length

386 amino acids

Sequence
(BLAST)

001: AFKIMTDPFV GSLTFVRIYS GKLVAGSYVL NANKDKKERI GRLLEMHANS KEDITVAVAG DIVALAGLKD TITGETLSDP DKPVVLERME FPDPVIKVAI
101: EPKTKADADK MATGLIKLAQ EDPSFHFSRD EETNQTVIEG MGELHLDIIV DRLKREFRVE ANVGAPQVNY RESISKISEV QYVHKKQSGG SGQFADIIVR
201: FEPLEAGSGY EFKSEIKGGA VPKEYVPGVM KGIEESLPNG VLAGYPVVDL RAVLVDGSYH DVDSSVLAFQ IAARGAFREG LRKAGPRLLE PIMKVEVITP
301: EEHLGDVIGD LNSRRGQVNS FGDKPGGLKV VDAFVPLAEM FQYVSTLRGM TKGRASYTMQ LAKFDVVPQH IQNELSAAKQ EEASTA

Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)

001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA

Arabidopsis Description

CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.