Factsheet for TraesCS2B01G404600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	99.74	99.74
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	99.61	99.61
Os04t0538100-01	Rice	plasma membrane	47.79	95.08
HORVU2Hr1G092180.1	Barley	plastid	93.36	93.97
Zm00001d002822_P001	Maize	plastid	92.06	91.94
Zm00001d025948_P001	Maize	plastid	91.54	91.54
EES12566	Sorghum	plastid	91.93	91.1
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	16.54	90.07
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	23.44	85.31
GSMUA_Achr5P13570_001	Banana	mitochondrion	75.91	80.52
VIT_00s0323g00080.t01	Wine grape	plastid	80.99	80.26
KRH57341	Soybean	nucleus, plastid	81.12	79.87
CDY46917	Canola	plastid	80.34	79.61
CDY31838	Canola	plastid	80.34	79.61
Bra027021.1-P	Field mustard	plastid	80.21	79.48
KRH04069	Soybean	nucleus, plastid	80.86	78.91
PGSC0003DMT400012076	Potato	cytosol, plastid	80.86	78.91
Solyc08g079180.2.1	Tomato	plastid	80.73	78.78
AT1G62750.1	Thale cress	plastid	80.21	78.67
TraesCS7B01G248200.1	Wheat	mitochondrion	41.41	41.95
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	23.57	21.47
TraesCS5B01G509600.1	Wheat	cytosol, golgi	23.44	21.35
TraesCS5B01G509700.1	Wheat	cytosol, golgi	23.31	21.23
TraesCS7B01G362600.1	Wheat	cytosol	23.31	21.23
TraesCS3B01G261500.1	Wheat	cytosol	23.31	21.23
TraesCS3B01G326200.1	Wheat	mitochondrion	16.8	19.17
TraesCS6B01G159200.1	Wheat	plastid	15.49	17.76
TraesCS6B01G224800.2	Wheat	plastid	15.49	17.63
TraesCS1B01G033500.1	Wheat	cytosol	8.98	17.12
TraesCS7B01G282300.1	Wheat	cytosol	21.61	16.7
TraesCS1B01G062700.1	Wheat	cytosol	20.31	15.51
TraesCS5B01G373200.1	Wheat	cytosol	20.44	15.02

Protein Annotations

MapMan:17.7.4.3	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
InterPro:EFG_III	InterPro:EFG_III/V	InterPro:EFG_V	InterPro:EFG_V-like	InterPro:EFTu-like_2	InterPro:EF_G_plantC
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005524	GO:GO:0005525	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006414
GO:GO:0007275	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009658	GO:GO:0009791	GO:GO:0009845	GO:GO:0009941
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0048046	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	HAMAP:MF_00054_B	HAMAP:MF_03063	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR43261	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00484	EnsemblPlantsGene:TraesCS2B01G404600	EnsemblPlants:TraesCS2B01G404600.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2
InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01434	TIGR:cd01886	TIGR:cd03713	TIGR:cd04088	TIGR:cd16262
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:572588740..572593547

Molecular Weight (calculated)

84153.0 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.197

Length

768 amino acids

Sequence
(BLAST)

001: MAAEALPRAA ASARRPSVAA ASASRLLLGH RPFLAPSASR FAAGRAAVAG PAASLRPRPR RPRLSVVAMA GNDRQVPLED YRNIGIMAHI DAGKTTTTER
101: ILYYTGRNYK IGEVHEGTAT MDWMEQEQER GITITSAATT AVWDKHRINI IDTPGHVDFT LEVERALRVL DGAICLFDSV AGVEPQSETV WRQADKYGVP
201: RICFVNKMDR LGANFFRTRD MIVANLGAKP LVIQLPIGSE DNFQGVVDLI RMKAIVWTGE ELGAQFSYQD IPADLEELAQ DYRLQMIETI VELDDEAMEG
301: YLEGKEPDEA TVKRLIRKGT IGASFVPILC GSAFKNKGVQ PLLDAVVDYL PSPLDLPPMK GTDPDDPELI LERRPSDDEP FSGLAFKIMT DPYVGSLTFV
401: RIYSGKLIAG SYVLNSNKDK KERIGRLLEM HANSKEDITV AVTGDIVALA GLKDTITGET LCDPDNLVVL ERMEFPDPVI KVAIEPKTKA DADKMANGLI
501: KLAQEDPSFH FSRDEETNQT VIEGMGELHL DIIVDRLKRE FKVEANVGAP QVNYRESISK IAEIQYVHKK QSGGSGQFAD IIVRFEPMEA GSGYEFKSEI
601: KGGAVPKEYV PGVMKGIEES LPNGVLAGYP VVDLRAVLVD GSYHDVDSSV LAFQIAARGA FREGLRKAGP RLLEPIMKVE VITPEEHLGD VIGDLNSRRG
701: QVNSFGDKPG GLKVVDAFVP LAEMFQYVST LRGMSKGRAS YTMQLAKFDV VPQHIQNQLS AAKEEAAA

Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)

001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA

Arabidopsis Description

CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.