Factsheet for PGSC0003DMT400012076

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g079180.2.1	Tomato	plastid	98.86	98.86
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	24.78	92.42
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	16.26	90.78
Os04t0538100-01	Rice	plasma membrane	42.44	86.53
CDY31838	Canola	plastid	84.37	85.68
CDY46917	Canola	plastid	84.37	85.68
Bra027021.1-P	Field mustard	plastid	84.24	85.55
VIT_00s0323g00080.t01	Wine grape	plastid	83.99	85.29
AT1G62750.1	Thale cress	plastid	84.75	85.19
KRH57341	Soybean	nucleus, plastid	83.35	84.1
GSMUA_Achr5P13570_001	Banana	mitochondrion	77.13	83.84
KRH04069	Soybean	nucleus, plastid	82.97	82.97
Zm00001d025948_P001	Maize	plastid	79.67	81.64
TraesCS2B01G404600.1	Wheat	plastid	78.91	80.86
Zm00001d002822_P001	Maize	plastid	78.91	80.75
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	78.78	80.73
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	78.78	80.73
EES12566	Sorghum	plastid	79.03	80.26
HORVU2Hr1G092180.1	Barley	plastid	77.51	79.95
PGSC0003DMT400066962	Potato	mitochondrion	40.79	42.24
PGSC0003DMT400024321	Potato	mitochondrion	16.01	18.92
PGSC0003DMT400070154	Potato	plastid	15.12	17.45
PGSC0003DMT400007735	Potato	cytosol	21.98	16.91
PGSC0003DMT400034344	Potato	mitochondrion	13.98	16.69
PGSC0003DMT400078978	Potato	cytosol	20.84	16.62

Protein Annotations

EntrezGene:102584198	MapMan:17.7.4.3	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870
Gene3D:3.40.50.300	ncoils:Coil	InterPro:EFG_III	InterPro:EFG_III/V	InterPro:EFG_V	InterPro:EFG_V-like
InterPro:EFTu-like_2	InterPro:EF_G_plantC	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721	UniProt:M1A0N5
HAMAP:MF_00054_B	HAMAP:MF_03063	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF14492	EnsemblPlantsGene:PGSC0003DMG400004738	PGSC:PGSC0003DMG400004738	EnsemblPlants:PGSC0003DMT400012076	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43261	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838
SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00484	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2	InterPro:Transl_elong_EFG/EF2_IV
UniParc:UPI0002964A31	RefSeq:XP_006355498.1	SEG:seg	:	:	:

Description

Elongation factor G [Source:PGSC_GENE;Acc:PGSC0003DMG400004738]

Coordinates

chr8:-:52799789..52805791

Molecular Weight (calculated)

86429.7 Da

IEP (calculated)

5.222

GRAVY (calculated)

-0.219

Length

787 amino acids

Sequence
(BLAST)

001: MAAESVTRMS SAASSLCNFN GSQRPVPVSN RVASSRRNRC VKLQSLASAS MSEFFGSSRV FSVNGSKSLG LSQKTRKNGF SVIAMAAAEE EKRTVPLKDY
101: RNIGIMAHID AGKTTTTERV LYYTGRNYKI GEVHEGTATM DWMEQEQERG ITITSAATTT FWNKHRINII DTPGHVDFTL EVERALRVLD GAICLFDSVA
201: GVEPQSETVW RQADKYGVPR ICFVNKMDRL GANFFRTRDM IVTNLGAKPL VIQIPIGAED TFKGLVDLVM MKAIVWSGEE LGAKFSYEDI PADLQELAEE
301: YRALMIETVV ELDDDVMEKY LEGVEPDDAT IKQLIRKGTI SGNFVPVLCG SAFKNKGVQP LLDAVVDYLP SPVDVPPMNG TDPDNPEVII ERAPSDDEPF
401: TGLAFKIMND PFVGSLTFVR VYSGKLTAGS YVLNANKGRK ERIGRLLEMH ANSREDVKTA LTGDIVALAG LKDTITGETL SDPEKPVVLE RMDFPDPVIK
501: VAIEPKTKAD IDKMAQGLIK LAQEDPSFHF SRDEEVNQTV IEGMGELHLE IIVDRLKREF KVEANVGAPQ VNYRESISRN AEVKYVHKKQ SGGSGQFADI
601: TVRFEPMEAG GGYEFKSEIK GGAVPKEYIP GVMKGLEECM SNGVLAGFPV VDVRAVLVDG SYHDVDSSVL AFQLAARGAF REGMRKASPQ LLEPIMKVEV
701: VTPEEHLGDV IGDLNSRRGQ INSFGDKPGG LKVVDALVPL AEMFNYVSTL RGMTKGRASY VMQLAKFDVV PQHIQNQLAK KEEAAAA

Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)

001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA

Arabidopsis Description

CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.