Factsheet for PGSC0003DMT400007735

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g071770.1.1	Tomato	cytosol	97.56	97.46
CDY10337	Canola	cytosol	36.75	79.32
CDY32224	Canola	cytosol	38.12	75.73
CDY10688	Canola	cytosol	63.34	74.31
AT3G22980.2	Thale cress	cytosol	73.41	73.99
VIT_04s0044g01790.t01	Wine grape	cytosol	74.49	73.98
KRH40894	Soybean	cytosol	24.83	73.41
Bra033543.1-P	Field mustard	cytosol	63.64	71.54
KRG94823	Soybean	cytosol	70.67	70.74
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	32.26	68.61
GSMUA_Achr2P17400_001	Banana	cytosol	55.03	68.33
CDY32225	Canola	nucleus	22.97	66.38
Os03t0650700-01	Rice	cytosol	60.8	60.45
Zm00001d033505_P001	Maize	cytosol	61.0	59.77
TraesCS5B01G373200.1	Wheat	cytosol	60.9	59.62
TraesCS5A01G370800.1	Wheat	cytosol	60.8	59.52
KXG37923	Sorghum	cytosol	60.8	59.52
TraesCS5D01G380500.1	Wheat	cytosol	60.61	59.33
HORVU5Hr1G092260.1	Barley	nucleus, plastid	60.12	52.74
KXG30393	Sorghum	nucleus	44.97	52.15
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	49.85	51.52
Os02t0543300-00	Rice	mitochondrion	50.54	51.44
TraesCS1B01G062700.1	Wheat	cytosol	50.24	51.09
TraesCS1D01G049600.1	Wheat	cytosol	46.73	49.9
HORVU1Hr1G009320.1	Barley	nucleus	35.39	40.49
PGSC0003DMT400078978	Potato	cytosol	25.42	26.34
PGSC0003DMT400012076	Potato	cytosol, plastid	16.91	21.98
PGSC0003DMT400066962	Potato	mitochondrion	15.54	20.92
PGSC0003DMT400034344	Potato	mitochondrion	12.61	19.58
PGSC0003DMT400070154	Potato	plastid	12.22	18.33
PGSC0003DMT400024321	Potato	mitochondrion	11.93	18.32

Protein Annotations

EntrezGene:102604340	MapMan:17.1.2.2.3.4	Gene3D:2.40.30.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0016787	InterPro:IPR000795	UniProt:M0ZTG0
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF14492	EnsemblPlantsGene:PGSC0003DMG400002992
PGSC:PGSC0003DMG400002992	EnsemblPlants:PGSC0003DMT400007735	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF12
InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	UniParc:UPI0002961385	RefSeq:XP_006340312.1	SEG:seg	:

Description

Translation elongation factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002992]

Coordinates

chr11:-:43236982..43240846

Molecular Weight (calculated)

112713.0 Da

IEP (calculated)

5.556

GRAVY (calculated)

-0.173

Length

1023 amino acids

Sequence
(BLAST)

0001: MGDSDGEKIR NICILAHVDH GKTTLADHLI ASSGGGVLHP KQAGKLRFMD YLDEEQRRAI TMKSSSIGLK YKEHSINLID SPGHMDFCSE VSTAARLSDG
0101: ALVLVDAVEG VHIQTHAVLR QAWIEKLTPC LVLNKIDRLI VELRLTPLEA YTRLQRIVHE VNSIVSAYKS EKYLSDVDSL LSAPSGLVED ENPDLEFLEE
0201: DEEDTFQPQK GNVAFVCALD GWGFSISDFA EFYASKLGAS SAALQKALWG PRYFNAKTKM IVGKKGISSG SKARPMFVQF VLEPLWQVYQ AAVEADGDKG
0301: MLEKVIKSFN LSIPPRELQN KDPKFVLQSV MSRWLPLSDT ILSMAVKHMP DPISAQSFRI SRLLPKRALL DMGVNPDVLS EAELVRKSVE SCDSSPDAPC
0401: VVFVSKMFAI PSKMLPRGEI MDDSGNGDSD ECFLAFARIF SGVLHAGQKI FVLTALYDPL KEESMQKHVQ EAELQSLYLM MGQGLKPVAS AKAGNVIAIR
0501: GLAQHILKSA TLSSTLNCWP LSSMTFQVSP MLKVAIEPSD PADMGALIKG LRLLNRADPF VEVSISARGE HVLAAAGEVH LERCIKDLKE RFAKINLEVS
0601: APLVSFKETI EGDTANPLEN LKLLSRSSDY LEKETPNGRC VVRVRVMKLP TALTKLLDES SELLEDIIGG KSLQACRSSE TLRGNIVEDE NPIEALKKRL
0701: IDAVESDFST GFADTEKDRI DKCKKTWQKF LKRIWALGPN QVGPNILLTP DVKGKSDDVS VLIKGSPYVS KKLGFTDDND DSSASPESST SVDPTLLREA
0801: ENLESSILSG FQLATASGPL CDEPMWGLAF VIEASISPLA TQPNDSDTPI PQLEQYGLFP GQVMTVVKDA CRAAVLQRKP RLVEAMYFCE LNTPHDQLGN
0901: TYTVLNRRRA HVVNEEMLEG SSLFTVHAYV PVAESFGFSD ELRRKTSGAA SALLVLSHWE ALPEDPFFVP RTEEEKEEFG DGASVPQSIA RKLMDSVRRK
1001: KGLPVEEKVV QFATKQRTLA RKV

Best Arabidopsis Sequence Match ( AT3G22980.1 )
(BLAST)

0001: MDESEGRKVR NICILAHVDH GKTTLADHLI ASSGGGVLHP RLAGKLRFMD YLDEEQRRAI TMKSSSISLK YKDYSLNLID SPGHMDFCSE VSTAARLSDG
0101: ALVLVDAVEG VHIQTHAVLR QAWIEKLTPC LVLNKIDRLI FELRLSPMEA YTRLIRIVHE VNGIVSAYKS EKYLSDVDSI LASPSGELSA ESLELLEDDE
0201: EVTFQPQKGN VVFVCALDGW GFGIAEFANF YASKLGASAT ALQKSLWGPR YYIPKTKMIV GKKNLSAGSK AKPMFVQFVL EPLWQVYEAA LDPGGDKAVL
0301: EKVIKSFNLS IPPRELQNKD PKNVLQSVMS RWLPLSDAVL SMAVKHLPDP IAAQAYRIPR LVPERKIIGG DDVDSSVLAE AELVRKSIEA CDSSSDSPCV
0401: VFVSKMFAIP MKMIPQDGNH RERMNGLNDD DSKSESDECF LAFARIFSGV LRAGQRVFVI TALYDPLKGE SSHKYIQEAE LHSLYLMMGQ GLTPVTEVKA
0501: GNVVAIRGLG PYISKSATLS STRNCWPLAS MEFQVSPTLR VAIEPSDPAD MSALMKGLRL LNRADPFVEI TVSARGEHVL AAAGEVHLER CVKDLKERFA
0601: KVNLEVSPPL VSYRETIEGD GSNLLESLRS LSLNSSDYIE KRTPNGRCII RVHVMKLPHA LTKLLDENTE LLGDIIGGKG SHSVKILESQ KPSLGENVDP
0701: IEELKKQLVE AGVSSSSETE KDREKCKTEW SKLLKRIWAL GPREKGPNIL FAPDGKRIAE DGSMLVRGSP HVSQRLGFTE DSTETPAEVS ETALYSEALT
0801: LESSIVSGFQ LATASGPLCD EPMWGLAFTI ESHLAPAEDV ETDKPENFGI FTGQVMTAVK DACRAAVLQT NPRIVEAMYF CELNTAPEYL GPMYAVLSRR
0901: RARILKEEMQ EGSSLFTVHA YVPVSESFGF ADELRKGTSG GASALMVLSH WEMLEEDPFF VPKTEEEIEE FGDGASVLPN TARKLINAVR RRKGLHVEEK
1001: VVQYATKQRT LARKV

Arabidopsis Description

Ribosomal protein S5/Elongation factor G/III/V family protein [Source:UniProtKB/TrEMBL;Acc:F4J2T9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.