CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32224	Canola	cytosol	76.16	70.1
KRH40894	Soybean	cytosol	47.26	64.74
CDY10688	Canola	cytosol	97.05	52.75
AT3G22980.2	Thale cress	cytosol	91.98	42.96
GSMUA_Achr2P17400_001	Banana	cytosol	63.92	36.77
PGSC0003DMT400007735	Potato	cytosol	79.32	36.75
Solyc11g071770.1.1	Tomato	cytosol	78.9	36.52
VIT_04s0044g01790.t01	Wine grape	cytosol	77.85	35.83
KRG94823	Soybean	cytosol	74.89	34.74
CDY49975	Canola	cytosol	27.22	32.33
Os03t0650700-01	Rice	cytosol	65.19	30.03
TraesCS5A01G370800.1	Wheat	cytosol	65.61	29.76
TraesCS5D01G380500.1	Wheat	cytosol	65.61	29.76
TraesCS5B01G373200.1	Wheat	cytosol	65.61	29.76
Zm00001d033505_P001	Maize	cytosol	64.98	29.5
KXG37923	Sorghum	cytosol	64.77	29.38
Os02t0543300-00	Rice	mitochondrion	56.54	26.67
HORVU5Hr1G092260.1	Barley	nucleus, plastid	65.4	26.59
TraesCS1D01G049600.1	Wheat	cytosol	53.38	26.41
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	52.95	25.35
TraesCS1B01G062700.1	Wheat	cytosol	53.38	25.15
CDX90241	Canola	cytosol, extracellular	37.97	22.76
CDY40423	Canola	cytosol	37.76	22.74
CDY24982	Canola	endoplasmic reticulum, vacuole	39.03	22.08
KXG30393	Sorghum	nucleus	38.4	20.63
CDY69302	Canola	cytosol	13.5	20.06
CDY32072	Canola	cytosol	24.05	17.62
CDY05533	Canola	cytosol	24.26	17.61
CDY15566	Canola	cytosol	26.79	15.25
CDX67441	Canola	plastid	20.04	13.85
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	20.04	13.81
CDY09982	Canola	nucleus	28.69	13.75
CDX84803	Canola	mitochondrion	17.93	13.62
CDY31838	Canola	plastid	22.15	13.55
CDY46917	Canola	plastid	22.15	13.55
CDY44781	Canola	plastid	19.2	13.48
CDY40739	Canola	plastid	19.2	13.3
CDY19061	Canola	mitochondrion	18.78	13.3
CDY54484	Canola	mitochondrion	18.78	13.3
CDX74705	Canola	plastid	20.04	12.58
CDY18957	Canola	plastid	20.04	12.57
HORVU1Hr1G009320.1	Barley	nucleus	23.63	12.53
CDY65992	Canola	plastid	17.72	12.46
CDY09816	Canola	plastid	17.72	12.44
CDX91105	Canola	plastid	17.51	12.31
CDY70516	Canola	cytosol	13.08	12.18
CDX85635	Canola	plastid	17.72	11.86
CDY71233	Canola	mitochondrion, nucleus	9.92	8.42
CDY70689	Canola	cytosol	9.49	8.32
CDX78349	Canola	cytosol	4.01	8.23
CDY32225	Canola	nucleus	1.69	2.26
CDY49974	Canola	nucleus	0.21	1.18
CDY70526	Canola	nucleus	0.21	1.18
CDY23967	Canola	cytosol	0.21	0.86
CDY54261	Canola	nucleus	0.21	0.43

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FBD4	UniProt:A0A078FBD4
EnsemblPlants:CDY10337	ProteinID:CDY10337	ProteinID:CDY10337.1	InterPro:EFG_III/V	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00032221001
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF3	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EDED9D	SEG:seg	:	:

Description

BnaC05g29420DBnaC05g29420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBD4]

Coordinates

chrLK032002:-:714267..716675

Molecular Weight (calculated)

52450.2 Da

IEP (calculated)

5.236

GRAVY (calculated)

-0.038

Length

474 amino acids

Sequence
(BLAST)

001: MDESDARNIR NICILAHVDH GKTTLADHLI ASSGDGELLK PRLAGKVRYM DYLDEEQRRA ITMKSSSISL RYKDYSLNLI DSPGHMDFCS EVSTAARLSD
101: GALVLVDAVE GVHIQTHAVL RQAWIEKLTP CLVLNKIDRL ICELRLSPME AYTRLIRIVH EVNGIVSAYK SEKYLSDVDS ILASPSGEIT DESLELLEDD
201: EEVTFQPQKG NVVFVCALDG WGFGVSEFAN FYASKLGAKA DTLQKSLWGP RYYIPKTKMI VGKKSLSAGS KTKPMFVQFV LDPLWQVYEA ALDPGVMSRW
301: LPLSDAVLSM AYIQEAELHS IYLMMGQGLK PVNEVKAGNV VAIRGLGPYI SKCATLSSTR NCWPLASMEF QVSPTLRVAI EPSDPSDMSA LMKGLRLLNR
401: ADPFVEITVS ARGEHVLAAA GEVHLERCIK DLIDRFARVN IEVSSPLVSY RETIEGDGSN LLESLTSLSL NTWD

Best Arabidopsis Sequence Match ( AT3G22980.1 )
(BLAST)

0001: MDESEGRKVR NICILAHVDH GKTTLADHLI ASSGGGVLHP RLAGKLRFMD YLDEEQRRAI TMKSSSISLK YKDYSLNLID SPGHMDFCSE VSTAARLSDG
0101: ALVLVDAVEG VHIQTHAVLR QAWIEKLTPC LVLNKIDRLI FELRLSPMEA YTRLIRIVHE VNGIVSAYKS EKYLSDVDSI LASPSGELSA ESLELLEDDE
0201: EVTFQPQKGN VVFVCALDGW GFGIAEFANF YASKLGASAT ALQKSLWGPR YYIPKTKMIV GKKNLSAGSK AKPMFVQFVL EPLWQVYEAA LDPGGDKAVL
0301: EKVIKSFNLS IPPRELQNKD PKNVLQSVMS RWLPLSDAVL SMAVKHLPDP IAAQAYRIPR LVPERKIIGG DDVDSSVLAE AELVRKSIEA CDSSSDSPCV
0401: VFVSKMFAIP MKMIPQDGNH RERMNGLNDD DSKSESDECF LAFARIFSGV LRAGQRVFVI TALYDPLKGE SSHKYIQEAE LHSLYLMMGQ GLTPVTEVKA
0501: GNVVAIRGLG PYISKSATLS STRNCWPLAS MEFQVSPTLR VAIEPSDPAD MSALMKGLRL LNRADPFVEI TVSARGEHVL AAAGEVHLER CVKDLKERFA
0601: KVNLEVSPPL VSYRETIEGD GSNLLESLRS LSLNSSDYIE KRTPNGRCII RVHVMKLPHA LTKLLDENTE LLGDIIGGKG SHSVKILESQ KPSLGENVDP
0701: IEELKKQLVE AGVSSSSETE KDREKCKTEW SKLLKRIWAL GPREKGPNIL FAPDGKRIAE DGSMLVRGSP HVSQRLGFTE DSTETPAEVS ETALYSEALT
0801: LESSIVSGFQ LATASGPLCD EPMWGLAFTI ESHLAPAEDV ETDKPENFGI FTGQVMTAVK DACRAAVLQT NPRIVEAMYF CELNTAPEYL GPMYAVLSRR
0901: RARILKEEMQ EGSSLFTVHA YVPVSESFGF ADELRKGTSG GASALMVLSH WEMLEEDPFF VPKTEEEIEE FGDGASVLPN TARKLINAVR RRKGLHVEEK
1001: VVQYATKQRT LARKV

Arabidopsis Description

Ribosomal protein S5/Elongation factor G/III/V family protein [Source:UniProtKB/TrEMBL;Acc:F4J2T9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.