CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84803	Canola	mitochondrion	98.28	18.27
CDY54484	Canola	mitochondrion	95.69	16.59
CDY19061	Canola	mitochondrion	95.69	16.59
CDY70526	Canola	nucleus	6.03	8.24
CDY49974	Canola	nucleus	5.17	7.06
CDX91105	Canola	plastid	37.93	6.53
CDY65992	Canola	plastid	37.93	6.53
CDY09816	Canola	plastid	37.93	6.52
CDX85635	Canola	plastid	37.93	6.21
CDY54261	Canola	nucleus	11.21	5.65
CDX78349	Canola	cytosol	9.48	4.76
CDY32225	Canola	nucleus	8.62	2.82
CDY70516	Canola	cytosol	11.21	2.55
CDY44781	Canola	plastid	13.79	2.37
CDY40739	Canola	plastid	13.79	2.34
CDY32072	Canola	cytosol	12.93	2.32
CDX67441	Canola	plastid	12.93	2.19
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	12.93	2.18
CDY05533	Canola	cytosol	12.07	2.14
CDY70689	Canola	cytosol	9.48	2.03
CDY71233	Canola	mitochondrion, nucleus	9.48	1.97
CDX90241	Canola	cytosol, extracellular	12.07	1.77
KRH75283	Soybean	cytosol, mitochondrion	6.03	1.59
CDY24982	Canola	endoplasmic reticulum, vacuole	11.21	1.55
CDY15566	Canola	cytosol	9.48	1.32
CDY40423	Canola	cytosol	8.62	1.27
CDY10688	Canola	cytosol	8.62	1.15
CDY09982	Canola	nucleus	9.48	1.11
CDX74705	Canola	plastid	6.9	1.06
CDY18957	Canola	plastid	6.9	1.06
CDY46917	Canola	plastid	6.9	1.03
CDY31838	Canola	plastid	6.9	1.03
CDY10337	Canola	cytosol	0.86	0.21
CDY32224	Canola	cytosol	0.86	0.19
CDY49975	Canola	cytosol	0.0	0.0
CDY69302	Canola	cytosol	0.0	0.0
KRH75282	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY23967	EnsemblPlantsGene:GSBRNA2T00024479001	Gene3D:2.40.50.250	GO:A0A078GFS2	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	InterPro:TypA_GTP-bd	PANTHER:PTHR42908	PANTHER:PTHR42908:SF8	ProteinID:CDY23967
ProteinID:CDY23967.1	UniParc:UPI0004EDE1EB	UniProt:A0A078GFS2	MapMan:35.1	:	:

Description

BnaC03g17240DBnaC03g17240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFS2]

Coordinates

chrLK032152:+:221348..222140

Molecular Weight (calculated)

12931.6 Da

IEP (calculated)

9.086

GRAVY (calculated)

-0.492

Length

116 amino acids

Sequence
(BLAST)

001: MGYGTITAHS LMGLEARGTL FVSPGLESYD GMIIGEHSRD TDLDVNPVKA KELTNIRSVN KDENVKLSPP RLMTLEEAIG YVASDELIEV TPKTIRLRKR
101: CLDVTKRKSQ SKRAKE

Best Arabidopsis Sequence Match ( AT2G31060.1 )
(BLAST)

001: MVEGAILVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DRPSVTEERC DEVESLVFDL FANCGATEEQ LDFPVLYASA KEGWASSTYT KDPPVDAKNM
101: ADLLDAVVRH VQPPKANLDE PFLMLVSMME KDFYLGRILT GRVTSGVVRV GDRVNGLRKT DSGSEKIEEA KVVKLMKKKG TTIVSIDAAG AGDIICMAGL
201: TAPSIGHTVA SAEVTTALPT VELDPPTISM TFGVNDSPLA GQDGTHLTGG RIGDRLMAEA ETNLAINVIP GLSESYEVQG RGELQLGILI ENMRREGFEL
301: SVSPPKVMYK TEKGQKLEPI EEVTIEINDE HVGLVMEALS HRRAEVIDMG PVPGNEGRTR LSLTCPSRGL VGYRCVFSSD TRGTGFMHRA FLTYEKYRGP
401: LGNVRKGVLV SMARGTITAH SLMSLEARGI LFVSPGLDSY DGMIIGEHSR ETDLDLNPVK AKELTNIRSA GKDENVKLSP PRLMTLEEAI GYVASDELIE
501: VTPKTIRLRK RCLDVNKRKS QSKRAKD

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4IPW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.