CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033543.1-P	Field mustard	cytosol	97.18	37.8
CDY70526	Canola	nucleus	9.04	37.65
CDY49974	Canola	nucleus	8.76	36.47
AT3G22980.2	Thale cress	cytosol	92.37	32.22
CDY10688	Canola	cytosol	77.12	31.31
CDY54261	Canola	nucleus	16.38	25.22
KRG94823	Soybean	cytosol	70.9	24.56
VIT_04s0044g01790.t01	Wine grape	cytosol	70.06	24.08
Solyc11g071770.1.1	Tomato	cytosol	67.51	23.34
GSMUA_Achr2P17400_001	Banana	cytosol	53.67	23.06
PGSC0003DMT400007735	Potato	cytosol	66.38	22.97
KXG30393	Sorghum	nucleus	51.69	20.75
Os03t0650700-01	Rice	cytosol	56.21	19.34
TraesCS5B01G373200.1	Wheat	cytosol	55.93	18.95
TraesCS5D01G380500.1	Wheat	cytosol	55.37	18.76
TraesCS5A01G370800.1	Wheat	cytosol	55.08	18.66
KXG37923	Sorghum	cytosol	54.24	18.37
Zm00001d033505_P001	Maize	cytosol	53.95	18.3
HORVU1Hr1G009320.1	Barley	nucleus	45.48	18.01
Os02t0543300-00	Rice	mitochondrion	48.59	17.11
HORVU5Hr1G092260.1	Barley	nucleus, plastid	54.52	16.55
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	45.2	16.16
TraesCS1B01G062700.1	Wheat	cytosol	45.48	16.0
CDY70516	Canola	cytosol	22.6	15.72
CDY70689	Canola	cytosol	22.6	14.79
CDY71233	Canola	mitochondrion, nucleus	22.6	14.34
TraesCS1D01G049600.1	Wheat	cytosol	36.44	13.47
CDY32072	Canola	cytosol	22.88	12.52
CDY05533	Canola	cytosol	22.88	12.4
CDX90241	Canola	cytosol, extracellular	22.88	10.24
CDY15566	Canola	cytosol	22.6	9.6
CDY24982	Canola	endoplasmic reticulum, vacuole	22.32	9.43
CDY23967	Canola	cytosol	2.82	8.62
CDY09982	Canola	nucleus	22.6	8.09
CDY40423	Canola	cytosol	15.54	6.99
CDX78349	Canola	cytosol	3.95	6.06
CDX74705	Canola	plastid	11.02	5.17
CDY18957	Canola	plastid	11.02	5.16
CDY46917	Canola	plastid	10.73	4.9
CDY31838	Canola	plastid	10.73	4.9
CDX67441	Canola	plastid	7.34	3.79
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	7.34	3.78
CDY44781	Canola	plastid	7.06	3.7
CDY40739	Canola	plastid	7.06	3.65
CDX84803	Canola	mitochondrion	5.93	3.37
CDX91105	Canola	plastid	6.21	3.26
CDY65992	Canola	plastid	6.21	3.26
CDY09816	Canola	plastid	6.21	3.26
CDY19061	Canola	mitochondrion	5.93	3.14
CDY54484	Canola	mitochondrion	5.93	3.14
CDX85635	Canola	plastid	6.21	3.11
CDY10337	Canola	cytosol	2.26	1.69
CDY32224	Canola	cytosol	1.13	0.78
KRH40894	Soybean	cytosol	0.56	0.58
CDY49975	Canola	cytosol	0.0	0.0
CDY69302	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY32225	EnsemblPlantsGene:GSBRNA2T00051659001	Gene3D:3.30.230.10	Gene3D:3.30.70.240	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:IPR014721	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	PANTHER:PTHR42908	PANTHER:PTHR42908:SF12	PFAM:PF00679
ProteinID:CDY32225	ProteinID:CDY32225.1	SMART:SM00838	SUPFAM:SSF54211	SUPFAM:SSF54980	UniParc:UPI0004EE8409
UniProt:A0A078H0K4	MapMan:35.1	:	:	:	:

Description

BnaA01g17590DBnaA01g17590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0K4]

Coordinates

chrLK032290:+:107962..109026

Molecular Weight (calculated)

39148.6 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.354

Length

354 amino acids

Sequence
(BLAST)

001: MKLPHSLTKL LDENTDLLGD IIGGKGSHKL ESQRPNLEEN VDPVEVLKNQ LVEAGVSSSS ETENDPEKCK AEWAKLLKRI WALGPREKGP NILFIPDGKR
101: ICEDGSILVR GSPHVSHRLG FTEDPTETPS DSALYSEAVT LESSIVSGFQ LATASGPLCD EPMWGLAFTI ESHLAEDLET EKQPENFGIF TGQVMTAVKD
201: ACRAAVLQTN PRIVEAMYFC ELNTAPEYLG PMYAVLSRRR ARVLKEEMQE GSSLFTVHAY VPVSESFGFA DELRKGTSGG ASALMVLSHW EMLEEDPFFV
301: PKTEEEIEEF GDGASVLPNT ARKLINAVRR RKGLHVEEKV VQHATKQRTL ARKV

Best Arabidopsis Sequence Match ( AT3G22980.1 )
(BLAST)

0001: MDESEGRKVR NICILAHVDH GKTTLADHLI ASSGGGVLHP RLAGKLRFMD YLDEEQRRAI TMKSSSISLK YKDYSLNLID SPGHMDFCSE VSTAARLSDG
0101: ALVLVDAVEG VHIQTHAVLR QAWIEKLTPC LVLNKIDRLI FELRLSPMEA YTRLIRIVHE VNGIVSAYKS EKYLSDVDSI LASPSGELSA ESLELLEDDE
0201: EVTFQPQKGN VVFVCALDGW GFGIAEFANF YASKLGASAT ALQKSLWGPR YYIPKTKMIV GKKNLSAGSK AKPMFVQFVL EPLWQVYEAA LDPGGDKAVL
0301: EKVIKSFNLS IPPRELQNKD PKNVLQSVMS RWLPLSDAVL SMAVKHLPDP IAAQAYRIPR LVPERKIIGG DDVDSSVLAE AELVRKSIEA CDSSSDSPCV
0401: VFVSKMFAIP MKMIPQDGNH RERMNGLNDD DSKSESDECF LAFARIFSGV LRAGQRVFVI TALYDPLKGE SSHKYIQEAE LHSLYLMMGQ GLTPVTEVKA
0501: GNVVAIRGLG PYISKSATLS STRNCWPLAS MEFQVSPTLR VAIEPSDPAD MSALMKGLRL LNRADPFVEI TVSARGEHVL AAAGEVHLER CVKDLKERFA
0601: KVNLEVSPPL VSYRETIEGD GSNLLESLRS LSLNSSDYIE KRTPNGRCII RVHVMKLPHA LTKLLDENTE LLGDIIGGKG SHSVKILESQ KPSLGENVDP
0701: IEELKKQLVE AGVSSSSETE KDREKCKTEW SKLLKRIWAL GPREKGPNIL FAPDGKRIAE DGSMLVRGSP HVSQRLGFTE DSTETPAEVS ETALYSEALT
0801: LESSIVSGFQ LATASGPLCD EPMWGLAFTI ESHLAPAEDV ETDKPENFGI FTGQVMTAVK DACRAAVLQT NPRIVEAMYF CELNTAPEYL GPMYAVLSRR
0901: RARILKEEMQ EGSSLFTVHA YVPVSESFGF ADELRKGTSG GASALMVLSH WEMLEEDPFF VPKTEEEIEE FGDGASVLPN TARKLINAVR RRKGLHVEEK
1001: VVQYATKQRT LARKV

Arabidopsis Description

Ribosomal protein S5/Elongation factor G/III/V family protein [Source:UniProtKB/TrEMBL;Acc:F4J2T9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.