CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37923	Sorghum	cytosol	65.53	55.31
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	29.37	53.85
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	59.86	53.33
TraesCS1B01G062700.1	Wheat	cytosol	60.32	52.88
Os02t0543300-00	Rice	mitochondrion	59.98	52.64
TraesCS1D01G049600.1	Wheat	cytosol	56.35	51.88
CDY32225	Canola	nucleus	20.75	51.69
HORVU1Hr1G009320.1	Barley	nucleus	50.11	49.44
GSMUA_Achr2P17400_001	Banana	cytosol	44.9	48.06
CDY10688	Canola	cytosol	46.15	46.67
VIT_04s0044g01790.t01	Wine grape	cytosol	53.85	46.12
Bra033543.1-P	Field mustard	cytosol	47.39	45.93
KRG94823	Soybean	cytosol	53.06	45.79
Solyc11g071770.1.1	Tomato	cytosol	52.49	45.21
AT3G22980.2	Thale cress	cytosol	51.81	45.02
PGSC0003DMT400007735	Potato	cytosol	52.15	44.97
CDY32224	Canola	cytosol	25.28	43.3
CDY10337	Canola	cytosol	20.63	38.4
KRH40894	Soybean	cytosol	9.98	25.43
EES01455	Sorghum	cytosol	24.26	25.39
KXG37183	Sorghum	cytosol	24.15	25.27
KXG37185	Sorghum	cytosol	24.15	25.27
EES03541	Sorghum	mitochondrion	24.04	25.15
EER90029	Sorghum	cytosol	23.24	20.6
EES12566	Sorghum	plastid	12.02	13.68
EER90530	Sorghum	mitochondrion, plastid	11.68	13.59
OQU75622	Sorghum	cytosol	4.76	12.39
OQU84528	Sorghum	cytosol	3.51	11.44
EES01486	Sorghum	mitochondrion	8.39	11.0
EER89181	Sorghum	mitochondrion	7.82	10.38
KXG30054	Sorghum	mitochondrion, plastid	7.14	9.39
OQU84405	Sorghum	plastid	6.46	8.47

Protein Annotations

MapMan:17.1.2.2.3.4	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.90.1430.10
UniProt:A0A194YQ78	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	InterPro:IPR014721	EnsemblPlants:KXG30393	ProteinID:KXG30393	ProteinID:KXG30393.2
InterPro:P-loop_NTPase	PFAM:PF00679	PFAM:PF03144	PANTHER:PTHR42908	PANTHER:PTHR42908:SF12	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	EnsemblPlantsGene:SORBI_3004G168900	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Transl_B-barrel_sf	UniParc:UPI000B8B98C6	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:51965213..51968167

Molecular Weight (calculated)

96685.9 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.176

Length

882 amino acids

Sequence
(BLAST)

001: MDRLITDLFL SPEDAYARLR GIVAEVNSIY STLRSGYYFS SLQDDKDGRR AGGGEEDDDE GDAFHPQKGN VVFACARDGW GFRIHRFADL YAQKTGASRS
101: KLLMGFWGPY YIDKKKKAVL PLPQSNEATS SGEDQQPMFV ENVLRPLWKV YQRGLRSNSA RWMDDNVVSF FNLVVSPREL YSEDPKTSLH AVMRAWLPLA
201: ESVMDMLVEC TPDPVAAQAF RVARLMPERR TAAANHTCSI VAEAEMVRSS VAACSASASA SAPIVVFVSK MFAVPYTMLP CRGLNRKELL IHSEPESEGE
301: CFLAFARVFS GVLRAGQKVF VLSTLYDPVK GDDAASKHVQ EVELHCLYEM LGQDLRPVPS VAAGHVVAIQ GLGQHVLKSA TLSSTKNCWP FSSMTFQVSP
401: MLKVAVEPSN PADLGALVKG LKLLNQADPL VVYTVSQRGE HVLAAAGQVH LDRCIKDLQE RFAKVQLGVS KPLVSFKETI QGEGVGLLGS MKAQQGFVER
501: TTPNGRFSVK VQVIRLPNAL TKVLAESEEL LGQIIDGKTS QLDQDGGNSI STTMLRQRLI CAIDSELEAI SEQVEKEKLE RCRKTLLGYL QRICALGPSH
601: VGPNFLLLPD FESKCGVTAS PNGKEDILVS SKCHVSEILG FARAPDAETK NATESETETS TYSLDSEALR NSIVSGFQFA TNAGPICDEP MRGVAFIVEA
701: HLLSNNSDVA IPSDDNIFTG QVITAVKEAC REAVLQSKPR LVEPMYFCEL TTPTEQLGAA FAVLGDCRAK VLKEEMQEGT SLFTVQAHLP VAESSDFPEK
801: LRKRTSGAAS AILAFSHWEV IPQDPFFTPK TPEEIERFGD GSSIGPNLAK KLMNSVRRRK GLHVEEKVVE HGTKQRTLGK KV

Best Arabidopsis Sequence Match ( AT3G22980.1 )
(BLAST)

0001: MDESEGRKVR NICILAHVDH GKTTLADHLI ASSGGGVLHP RLAGKLRFMD YLDEEQRRAI TMKSSSISLK YKDYSLNLID SPGHMDFCSE VSTAARLSDG
0101: ALVLVDAVEG VHIQTHAVLR QAWIEKLTPC LVLNKIDRLI FELRLSPMEA YTRLIRIVHE VNGIVSAYKS EKYLSDVDSI LASPSGELSA ESLELLEDDE
0201: EVTFQPQKGN VVFVCALDGW GFGIAEFANF YASKLGASAT ALQKSLWGPR YYIPKTKMIV GKKNLSAGSK AKPMFVQFVL EPLWQVYEAA LDPGGDKAVL
0301: EKVIKSFNLS IPPRELQNKD PKNVLQSVMS RWLPLSDAVL SMAVKHLPDP IAAQAYRIPR LVPERKIIGG DDVDSSVLAE AELVRKSIEA CDSSSDSPCV
0401: VFVSKMFAIP MKMIPQDGNH RERMNGLNDD DSKSESDECF LAFARIFSGV LRAGQRVFVI TALYDPLKGE SSHKYIQEAE LHSLYLMMGQ GLTPVTEVKA
0501: GNVVAIRGLG PYISKSATLS STRNCWPLAS MEFQVSPTLR VAIEPSDPAD MSALMKGLRL LNRADPFVEI TVSARGEHVL AAAGEVHLER CVKDLKERFA
0601: KVNLEVSPPL VSYRETIEGD GSNLLESLRS LSLNSSDYIE KRTPNGRCII RVHVMKLPHA LTKLLDENTE LLGDIIGGKG SHSVKILESQ KPSLGENVDP
0701: IEELKKQLVE AGVSSSSETE KDREKCKTEW SKLLKRIWAL GPREKGPNIL FAPDGKRIAE DGSMLVRGSP HVSQRLGFTE DSTETPAEVS ETALYSEALT
0801: LESSIVSGFQ LATASGPLCD EPMWGLAFTI ESHLAPAEDV ETDKPENFGI FTGQVMTAVK DACRAAVLQT NPRIVEAMYF CELNTAPEYL GPMYAVLSRR
0901: RARILKEEMQ EGSSLFTVHA YVPVSESFGF ADELRKGTSG GASALMVLSH WEMLEEDPFF VPKTEEEIEE FGDGASVLPN TARKLINAVR RRKGLHVEEK
1001: VVQYATKQRT LARKV

Arabidopsis Description

Ribosomal protein S5/Elongation factor G/III/V family protein [Source:UniProtKB/TrEMBL;Acc:F4J2T9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.