CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75622	Sorghum	cytosol	31.32	77.88
EES01455	Sorghum	cytosol	77.82	77.82
KXG37183	Sorghum	cytosol	77.82	77.82
KXG37185	Sorghum	cytosol	77.82	77.82
Os01t0723000-01	Rice	cytosol, nucleus, plasma membrane	77.22	76.32
OQU84528	Sorghum	cytosol	10.44	32.47
EER90029	Sorghum	cytosol	37.13	31.46
KXG37923	Sorghum	cytosol	33.93	27.37
KXG30393	Sorghum	nucleus	25.15	24.04
EES12566	Sorghum	plastid	20.52	22.32
EES01486	Sorghum	mitochondrion	16.61	20.8
EER90530	Sorghum	mitochondrion, plastid	18.39	20.45
OQU84405	Sorghum	plastid	15.07	18.87
KXG30054	Sorghum	mitochondrion, plastid	14.59	18.33
EER89181	Sorghum	mitochondrion	14.35	18.2

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EntrezGene:8059202	UniProt:C5XIE3	EnsemblPlants:EES03541	ProteinID:EES03541	ProteinID:EES03541.1
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	InterPro:IPR000795
InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	EnsemblPlantsGene:SORBI_3003G280500	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0001A84D03	RefSeq:XP_002458421.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:61563437..61567044

Molecular Weight (calculated)

92500.6 Da

IEP (calculated)

7.216

GRAVY (calculated)

-0.125

Length

843 amino acids

Sequence
(BLAST)

001: MVKVTAGQLR ASMNKKHNIR NISVIAHVDH GKSTLTDSLV AAAGIIAQDA AGGVRMTDTR ADEAERGITI KSTGISLYYE MGAARFGGGT SSYLINLVDS
101: PGHVDFSSEV TAALRITDGA LVVVDCIEGV CVQTETVLRQ ALAERIKPVL VVNKMDRCFL ELQQNGEEAY QAFCRVIENA NVVISTYEDS KLGDCQVSPE
201: KGTVAFSAGL HGWAFTLSDF AKMYAAKFNV DEARMTERLW GEHFFDPATR SWSTRHTGSP TCQRGFVQFC YQPIRQIIQA CMTDGGGGKE TLWPMLHKLS
301: VSLKAVDREL SAGKALMKRV MQAWLPASAA LLEMIVFHLP SPAKAQQYRV ETLYEGPLDD AYAAGIRSCD PEGPLMLYVS KMIPAASDKG RFYAFGRVFS
401: GTVATGTKVR IMGPNYVPGG KKDLFVKTVQ RTVIWMGKRQ ESVDDVPCGN TVALVGLDHF ITKSATLTDD RAVDAHPMKA MRFSVSPVVH KSVACRNAAD
501: LPKLVEGLKR LAKSDPLVVC TVTETGEHVV AGVGDLHLEI CLKDLRQDFM GGAEIVVGPP VVSYRETVLA RSCRTVMSKS PNKHNRLYME AWPLQKELAE
601: AIDDDELVGS KDDTKVRAKV LSEEFGWDKD VAKKIWCFGP EATGPNMVVD MCRGVQYVGE IRDSVVAGFQ WASKEGALAE ESMRGVCFEL RDVVLHADAI
701: HRGGGQIIPT ARRAIYAAQL TAMPRLMEPV YLVEIQAPER ATGSIYSLLN KKRGSVIEER QRPGTPLINF KAYLPVTESL EFSEKLRAET SSEAFPQCVV
801: DHWEAINSDP LEEGSMAAKL IAGIRKRKGL KNMIPLSEFE DRL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.