Factsheet for Os01t0723000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18203134
plasma membrane: 27800704

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0742200-01	Rice	cytosol, nucleus	74.91	77.36
EES03541	Sorghum	mitochondrion	76.32	77.22
Os05t0467501-00	Rice	cytosol	25.44	47.59
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	5.86	35.46
Os06t0608300-01	Rice	nucleus	36.58	31.29
Os02t0543300-00	Rice	mitochondrion	31.89	27.06
Os03t0650700-01	Rice	cytosol	32.36	26.82
Os04t0538100-01	Rice	plasma membrane	11.25	24.87
Os03t0565500-01	Rice	mitochondrion	19.11	21.53
Os01t0752700-01	Rice	mitochondrion	16.18	20.51
Os02t0285800-01	Rice	plasma membrane	15.24	19.43
Os06t0144800-01	Rice	mitochondrion	14.89	19.16

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EntrezGene:4324669	EMBL:AK073592	EMBL:AK102586	ProteinID:BAB84439.1	ProteinID:BAB89493.1
ProteinID:BAF06018.1	ProteinID:BAS74100.1	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	EnsemblPlantsGene:Os01g0723000	EnsemblPlants:Os01t0723000-01	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	UniProt:Q8W0C4	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI00000A0BD4
RefSeq:XP_015614740.1	SEG:seg	:	:	:	:

Description

Similar to Elongation factor EF-2 (Fragment). (Os01t0723000-01)

Coordinates

chr1:-:30143647..30146827

Molecular Weight (calculated)

95061.4 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.304

Length

853 amino acids

Sequence
(BLAST)

001: MVRFTAEELR ASMDKKDNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQDV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDAALRSFE GKRDGNSYLI
101: NLIDSPGHID FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQSLAER IKPVLTVNKM DRCFLELQQS GEEAYQAFSR VIESVNVTMA PYEDKNLGDC
201: MVAPEKGTVA FSAGLHGWAF TLSNFAKMYK AKFKVDEAKM MERLWGENYF DHTTKKWTTT APSTSSKTCQ RGFVQFCYEP IRRIISACMN DDKENLWDML
301: TKLKITLKAE EKELTGKKLM KRVMQAWLPA SDALLEMIVF HLPSPAKAQQ YRVDTLYDGP LDDPYATAIR NCDPKGPLMV YVSKMIPASD KGRFFAFGRV
401: FSGTVATGNK VRIMGPNFVP GEKKDLYVKT VQRTVIWMGK KQESVDDVPC GNTVAMVGLD QFITKNATLT DEKAVDAHPI KAMKFSVSPV VRKSVACKNA
501: SELPKLVEGL KRLAKSDPLV VCTIEESGEH VIAGVGQLHL EICIKDLQED FMGGAEIIVG PPIITYRETV TKNSCRTVMS KSPNKHNRLY MEARPLDKED
601: LQQDEPSLCK AIDDERIGPK DDIKERGKIL SEEFGWDKDL AKKIWAFGPE TKGPNLLVDM CKGVQYLSEI KDSVVAGFQW ASKEGALAEE NMRGVCFELC
701: DVTLHSDSIH RGGGQLIPTA RRAMYAAQLT ASPRLMEPMY QVDIQVPKTA VGNVYGVLNS RNGELVEESE RTGTPLSNLR FYLPVAKSFD FTEKLRAETS
801: GQAFPQCIFH HWQTMRSDPF QEGSEAAKVI TDIRKRKGLK DIITPLSDYE DKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.