Factsheet for Os02t0543300-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0650700-01	Rice	cytosol	67.46	65.89
KXG30393	Sorghum	nucleus	52.64	59.98
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	57.51	58.38
TraesCS1B01G062700.1	Wheat	cytosol	58.11	58.05
TraesCS1D01G049600.1	Wheat	cytosol	54.53	57.2
CDY10337	Canola	cytosol	26.67	56.54
CDY10688	Canola	cytosol	48.16	55.5
CDY32224	Canola	cytosol	27.76	54.17
GSMUA_Achr2P17400_001	Banana	cytosol	43.38	52.91
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	25.17	52.6
KRG94823	Soybean	cytosol	53.23	52.35
VIT_04s0044g01790.t01	Wine grape	cytosol	53.43	52.14
AT3G22980.2	Thale cress	cytosol	51.34	50.84
PGSC0003DMT400007735	Potato	cytosol	51.44	50.54
Solyc11g071770.1.1	Tomato	cytosol	51.34	50.39
Bra033543.1-P	Field mustard	cytosol	45.27	50.0
CDY32225	Canola	nucleus	17.11	48.59
KRH40894	Soybean	cytosol	16.52	47.98
HORVU1Hr1G009320.1	Barley	nucleus	41.99	47.2
Os01t0742200-01	Rice	cytosol, nucleus	27.96	34.02
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	4.48	31.91
Os01t0723000-01	Rice	cytosol, nucleus, plasma membrane	27.06	31.89
Os06t0608300-01	Rice	nucleus	25.17	25.38
Os04t0538100-01	Rice	plasma membrane	8.76	22.8
Os05t0467501-00	Rice	cytosol	10.05	22.15
Os03t0565500-01	Rice	mitochondrion	14.73	19.55
Os01t0752700-01	Rice	mitochondrion	13.03	19.47
Os06t0144800-01	Rice	mitochondrion	11.34	17.19
Os02t0285800-01	Rice	plasma membrane	11.34	17.04

Protein Annotations

MapMan:17.1.2.2.3.4	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
ProteinID:BAD28240.1	ProteinID:BAF08988.1	ProteinID:BAS79123.1	ncoils:Coil	ProteinID:EAZ23371.1	InterPro:EFG_III/V
InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:IPR014721	EnsemblPlantsGene:Os02g0543300	EnsemblPlants:Os02t0543300-00
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF14492	PRINTS:PR00315
PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF12	UniProt:Q6ESY0	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:TF_GTP-bd_dom
InterPro:Transl_B-barrel_sf	UniParc:UPI00003CE64E	SEG:seg	:	:	:

Description

Protein synthesis factor, GTP-binding domain containing protein. (Os02t0543300-00)

Coordinates

chr2:-:20178901..20182030

Molecular Weight (calculated)

109193.0 Da

IEP (calculated)

6.887

GRAVY (calculated)

-0.165

Length

1005 amino acids

Sequence
(BLAST)

0001: MAAAAAAAEG RGPRRVRNTC ILAHVDHGKT SLADHLIAAY GSERRVSERM AGSARVMDHL EEEQRRAITM KSASIALRRG GEDGGGHRVH LIDSPGHIDF
0101: CSEVSAAARL ADSALVLVDA AEGVRVQTHA ALRQAFVERL RPCLVLNKVD RLVAELRLTP AEAHARLRRI VSEVNSIYSA LRSRSYFSTL DAACALSQEL
0201: PDNGDAADEE EDAFQPQNGN VVFACAREGW GFRLVTLAKL LAPKLRADPA ELLKGLWGQK YFDERSRTVV GKEAMAAATA NPNPKPMFVK YVLEPLWGQY
0301: HKMKRKLRLA EAVFDMVVEC TPNPIAAQAT RVARLMPAAK TEQLTAAAPC PAAVAAEVEK VRRCVATCNA STSAPVVVFV SKMFAVPYRF LPSRGVNGEP
0401: LNHRGSSSSA ESGECFLAFA RVFSGVLRAG HKVFVLSPMY DPLRGGDDAM QQKHLQEVEL QHLYQMMGPD LEIVSAVRAG DVLAIEGLGH HVLKNATLSS
0501: TKNCQPFSGM MFQVSPMLKV AIEPSNPSDL GALVKGLKLL NQADPFIEYT VSERGEHVLA AAGEIHLEHC IKNLQERFAR VQLEVSKPLV SFKDTIQGEG
0601: AGIMESLKAS HEFVERTTPN GRFTVRVKVF RLPNAVTKVI EDSKELLAQV IEGDSGNSNG VLDSRFSQDG GDSASTLRQL LINAIDSDLE ALSAQLDDEK
0701: TESYRKMLIG YLQRIWALGP LQVGPNLLLS PDATSSDGVV TSQDGREGIL VRGTCHVSER LGLVNSSDAK TTIGIDGSQS AVDGLDPETV KNSIATGFQL
0801: ATNAGPLCGE PTWGLIFLVK PYILPDSADA SNNQSDHYST FSGQIITAVR EACQAAILES KPRLVEPMYF CELTTPTEQL GSMYAVLGNC RARVLKEEMQ
0901: EGTSLFTVHA YLSVAESSEF SKKLRNATAG AASALLAFSH WETVPQDPFF VPKTREEIEE FGDGSNIGPN LATKLMNSVR RRKGLHVEEK IVEYGTKQRT
1001: LAKKV

Best Arabidopsis Sequence Match ( AT3G22980.1 )
(BLAST)

0001: MDESEGRKVR NICILAHVDH GKTTLADHLI ASSGGGVLHP RLAGKLRFMD YLDEEQRRAI TMKSSSISLK YKDYSLNLID SPGHMDFCSE VSTAARLSDG
0101: ALVLVDAVEG VHIQTHAVLR QAWIEKLTPC LVLNKIDRLI FELRLSPMEA YTRLIRIVHE VNGIVSAYKS EKYLSDVDSI LASPSGELSA ESLELLEDDE
0201: EVTFQPQKGN VVFVCALDGW GFGIAEFANF YASKLGASAT ALQKSLWGPR YYIPKTKMIV GKKNLSAGSK AKPMFVQFVL EPLWQVYEAA LDPGGDKAVL
0301: EKVIKSFNLS IPPRELQNKD PKNVLQSVMS RWLPLSDAVL SMAVKHLPDP IAAQAYRIPR LVPERKIIGG DDVDSSVLAE AELVRKSIEA CDSSSDSPCV
0401: VFVSKMFAIP MKMIPQDGNH RERMNGLNDD DSKSESDECF LAFARIFSGV LRAGQRVFVI TALYDPLKGE SSHKYIQEAE LHSLYLMMGQ GLTPVTEVKA
0501: GNVVAIRGLG PYISKSATLS STRNCWPLAS MEFQVSPTLR VAIEPSDPAD MSALMKGLRL LNRADPFVEI TVSARGEHVL AAAGEVHLER CVKDLKERFA
0601: KVNLEVSPPL VSYRETIEGD GSNLLESLRS LSLNSSDYIE KRTPNGRCII RVHVMKLPHA LTKLLDENTE LLGDIIGGKG SHSVKILESQ KPSLGENVDP
0701: IEELKKQLVE AGVSSSSETE KDREKCKTEW SKLLKRIWAL GPREKGPNIL FAPDGKRIAE DGSMLVRGSP HVSQRLGFTE DSTETPAEVS ETALYSEALT
0801: LESSIVSGFQ LATASGPLCD EPMWGLAFTI ESHLAPAEDV ETDKPENFGI FTGQVMTAVK DACRAAVLQT NPRIVEAMYF CELNTAPEYL GPMYAVLSRR
0901: RARILKEEMQ EGSSLFTVHA YVPVSESFGF ADELRKGTSG GASALMVLSH WEMLEEDPFF VPKTEEEIEE FGDGASVLPN TARKLINAVR RRKGLHVEEK
1001: VVQYATKQRT LARKV

Arabidopsis Description

Ribosomal protein S5/Elongation factor G/III/V family protein [Source:UniProtKB/TrEMBL;Acc:F4J2T9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.