Factsheet for AT3G22980.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	44.14	93.14
CDY10688	Canola	cytosol	79.61	92.66
CDY32225	Canola	nucleus	32.22	92.37
CDY10337	Canola	cytosol	42.96	91.98
CDY32224	Canola	cytosol	46.21	91.07
Bra033543.1-P	Field mustard	cytosol	81.48	90.88
Solyc11g071770.1.1	Tomato	cytosol	74.09	73.44
PGSC0003DMT400007735	Potato	cytosol	73.99	73.41
KRH40894	Soybean	cytosol	25.02	73.41
VIT_04s0044g01790.t01	Wine grape	cytosol	72.41	71.36
KRG94823	Soybean	cytosol	71.13	70.65
GSMUA_Achr2P17400_001	Banana	cytosol	53.4	65.78
Os03t0650700-01	Rice	cytosol	59.9	59.09
TraesCS5B01G373200.1	Wheat	cytosol	60.39	58.66
TraesCS5A01G370800.1	Wheat	cytosol	60.0	58.28
TraesCS5D01G380500.1	Wheat	cytosol	60.0	58.28
Zm00001d033505_P001	Maize	cytosol	59.01	57.38
KXG37923	Sorghum	cytosol	58.92	57.22
HORVU5Hr1G092260.1	Barley	nucleus, plastid	59.61	51.89
KXG30393	Sorghum	nucleus	45.02	51.81
Os02t0543300-00	Rice	mitochondrion	50.84	51.34
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	49.06	50.3
TraesCS1B01G062700.1	Wheat	cytosol	49.36	49.8
TraesCS1D01G049600.1	Wheat	cytosol	46.21	48.96
HORVU1Hr1G009320.1	Barley	nucleus	35.57	40.38
AT3G12915.2	Thale cress	cytosol	27.49	35.41
AT1G56070.2	Thale cress	cytosol	28.97	34.88
AT5G25230.1	Thale cress	cytosol	24.34	25.39
AT1G06220.2	Thale cress	cytosol	24.53	25.23
AT1G62750.1	Thale cress	plastid	16.85	21.84
AT2G45030.1	Thale cress	mitochondrion	15.86	21.35
AT1G45332.1	Thale cress	mitochondrion	15.76	21.22
AT5G39900.1	Thale cress	mitochondrion	13.1	20.06
AT5G08650.1	Thale cress	plastid	13.0	19.38
AT2G31060.3	Thale cress	mitochondrion	12.41	18.78
AT5G13650.2	Thale cress	plastid	11.72	17.6

Protein Annotations

MapMan:17.1.2.2.3.4	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EntrezGene:821872	ProteinID:AEE76702.1	ProteinID:ANM65189.1	ProteinID:ANM65190.1	ArrayExpress:AT3G22980
EnsemblPlantsGene:AT3G22980	RefSeq:AT3G22980	TAIR:AT3G22980	RefSeq:AT3G22980-TAIR-G	EnsemblPlants:AT3G22980.2	Unigene:At.37782
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	UniProt:F4J2T9	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	InterPro:IPR014721
RefSeq:NP_001319621.1	RefSeq:NP_001327177.1	RefSeq:NP_188938.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF14492	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF12
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	UniParc:UPI00001634E7	SEG:seg	:

Description

Ribosomal protein S5/Elongation factor G/III/V family protein [Source:UniProtKB/TrEMBL;Acc:F4J2T9]

Coordinates

chr3:-:8160075..8163788

Molecular Weight (calculated)

111960.0 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.179

Length

1015 amino acids

Sequence
(BLAST)

0001: MDESEGRKVR NICILAHVDH GKTTLADHLI ASSGGGVLHP RLAGKLRFMD YLDEEQRRAI TMKSSSISLK YKDYSLNLID SPGHMDFCSE VSTAARLSDG
0101: ALVLVDAVEG VHIQTHAVLR QAWIEKLTPC LVLNKIDRLI FELRLSPMEA YTRLIRIVHE VNGIVSAYKS EKYLSDVDSI LASPSGELSA ESLELLEDDE
0201: EVTFQPQKGN VVFVCALDGW GFGIAEFANF YASKLGASAT ALQKSLWGPR YYIPKTKMIV GKKNLSAGSK AKPMFVQFVL EPLWQVYEAA LDPGGDKAVL
0301: EKVIKSFNLS IPPRELQNKD PKNVLQSVMS RWLPLSDAVL SMAVKHLPDP IAAQAYRIPR LVPERKIIGG DDVDSSVLAE AELVRKSIEA CDSSSDSPCV
0401: VFVSKMFAIP MKMIPQDGNH RERMNGLNDD DSKSESDECF LAFARIFSGV LRAGQRVFVI TALYDPLKGE SSHKYIQEAE LHSLYLMMGQ GLTPVTEVKA
0501: GNVVAIRGLG PYISKSATLS STRNCWPLAS MEFQVSPTLR VAIEPSDPAD MSALMKGLRL LNRADPFVEI TVSARGEHVL AAAGEVHLER CVKDLKERFA
0601: KVNLEVSPPL VSYRETIEGD GSNLLESLRS LSLNSSDYIE KRTPNGRCII RVHVMKLPHA LTKLLDENTE LLGDIIGGKG SHSVKILESQ KPSLGENVDP
0701: IEELKKQLVE AGVSSSSETE KDREKCKTEW SKLLKRIWAL GPREKGPNIL FAPDGKRIAE DGSMLVRGSP HVSQRLGFTE DSTETPAEVS ETALYSEALT
0801: LESSIVSGFQ LATASGPLCD EPMWGLAFTI ESHLAPAEDV ETDKPENFGI FTGQVMTAVK DACRAAVLQT NPRIVEAMYF CELNTAPEYL GPMYAVLSRR
0901: RARILKEEMQ EGSSLFTVHA YVPVSESFGF ADELRKGTSG GASALMVLSH WEMLEEDPFF VPKTEEEIEE FGDGASVLPN TARKLINAVR RRKGLHVEEK
1001: VVQYATKQRT LARKV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.