Factsheet for AT5G25230.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71233	Canola	mitochondrion, nucleus	54.57	95.16
AT1G06220.2	Thale cress	cytosol	96.2	94.83
CDY70689	Canola	cytosol	52.72	94.82
CDY15566	Canola	cytosol	80.37	93.88
Bra030642.1-P	Field mustard	cytosol	92.5	91.19
Bra024798.1-P	Field mustard	cytosol	91.98	90.96
CDY09982	Canola	nucleus	92.29	90.8
VIT_11s0118g00720.t01	Wine grape	nucleus	85.92	84.62
Solyc07g007210.2.1	Tomato	nucleus	79.55	83.68
CDY69302	Canola	cytosol	27.34	83.39
KRH20245	Soybean	nucleus	84.48	83.37
KRH03566	Soybean	nucleus	84.48	83.2
PGSC0003DMT400078978	Potato	cytosol	82.12	80.95
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	80.58	80.74
Zm00001d046549_P002	Maize	cytosol	76.26	75.79
EER90029	Sorghum	cytosol	77.49	75.78
Os06t0608300-01	Rice	nucleus	77.08	75.23
TraesCS7D01G376800.1	Wheat	cytosol	76.26	74.65
TraesCS7A01G380300.1	Wheat	nucleus	76.16	74.55
TraesCS7B01G282300.1	Wheat	cytosol	76.16	74.55
HORVU7Hr1G090710.6	Barley	plastid	74.31	73.03
AT1G56070.2	Thale cress	cytosol	32.68	37.72
AT3G12915.2	Thale cress	cytosol	30.22	37.31
AT3G22980.2	Thale cress	cytosol	25.39	24.34
AT1G62750.1	Thale cress	plastid	17.37	21.58
AT2G45030.1	Thale cress	mitochondrion	15.93	20.56
AT1G45332.1	Thale cress	mitochondrion	15.72	20.29
AT5G39900.1	Thale cress	mitochondrion	12.33	18.1
AT2G31060.3	Thale cress	mitochondrion	12.13	17.59
AT5G13650.2	Thale cress	plastid	11.72	16.86
AT5G08650.1	Thale cress	plastid	11.51	16.45

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EntrezGene:832594	EMBL:AC006259	ProteinID:AED93415.1	ProteinID:ANM69055.1	ArrayExpress:AT5G25230
EnsemblPlantsGene:AT5G25230	RefSeq:AT5G25230	TAIR:AT5G25230	RefSeq:AT5G25230-TAIR-G	EnsemblPlants:AT5G25230.1	TAIR:AT5G25230.1
Unigene:At.54987	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N	InterPro:EFTu-like_2	UniProt:F4JWP9
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005681
GO:GO:0005730	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009506	GO:GO:0009987	GO:GO:0016607	GO:GO:0016787	InterPro:IPR000795	InterPro:IPR014721
RefSeq:NP_001318643.1	RefSeq:NP_197905.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF16004	PO:PO:0000005	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI0000162587	SEG:seg	:

Description

GFL109 kDa U5 small nuclear ribonucleoprotein component GFL [Source:UniProtKB/Swiss-Prot;Acc:F4JWP9]

Coordinates

chr5:+:8739545..8743880

Molecular Weight (calculated)

108810.0 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.210

Length

973 amino acids

Sequence
(BLAST)

001: MDGSLYGECG NYIGPEIESD RDSDDSVEDE DLQEPGGSNG WITTINENQN IVLPEDKKYY PIAKEVYGED VETLVMDEDE QSLEQPIIKP VRDIRFEVGV
101: IKDQTTTYVS TLFLIGLMSN PALVRNVALV GHLQHGKTVF MDMLVEQTHR MSTFNAENDK HMRYTDTRVD EQERNISIKA VPMSLVLEDS RSKSYLCNIM
201: DTPGNVNFSD EMTASLRLAD GAVFIVDAAQ GVMVNTERAI RHAIQDHLPI VVVINKVDRL ITELKLPPRD AYYKLRYTIE VINNHISAAS TNAADLPLID
301: PAAGNVCFAS GTAGWSFTLQ SFARMYAKLH GVAMDVDKFA SRLWGDVYYH PDTRVFNTSP PVGGGERAFV QFILEPLYKI YSQVIGEHKK SVETTLAELG
401: VTLSNSAYKL NVRPLLRLAC SSVFGSASGF TDMLVKHIPS PREAAARKVD HSYTGTKDSP IYESMVECDP SGPLMVNVTK LYPKSDTSVF DVFGRVYSGR
501: LQTGQSVRVL GEGYSPEDEE DMTIKEVTKL WIYQARYRIP VSSAPPGSWV LIEGVDASIM KTATLCNASY DEDVYIFRAL KFNTLPVVKT ATEPLNPSEL
601: PKMVEGLRKI SKSYPLAITK VEESGEHTIL GTGELYLDSI IKDLRELYSE VQVKVADPVV SFCETVVESS SMKCFAETPN KKNKLTMIAE PLDRGLAEDI
701: ENGVVSIDWN RVQLGDFFRT KYDWDLLAAR SIWAFGPDKQ GTNILLDDTL PTEVDRNLMM GVKDSIVQGF QWGAREGPLC DEPIRNVKFK IVDARIAPEP
801: LHRGSGQMIP TARRVAYSAF LMATPRLMEP VYYVEIQTPI DCVTAIYTVL SRRRGYVTSD VPQPGTPAYI VKAFLPVIES FGFETDLRYH TQGQAFCLSV
901: FDHWAIVPGD PLDKAIQLRP LEPAPIQHLA REFMVKTRRR KGMSEDVSGN KFFDEAMMVE LAQQTGDLHL QMI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.