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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • plastid 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_11s0118g00720.t01 Wine grape nucleus 87.54 86.03
CDY71233 Canola mitochondrion, nucleus 49.33 85.84
Solyc07g007210.2.1 Tomato nucleus 81.67 85.73
CDY70689 Canola cytosol 47.68 85.58
EER90029 Sorghum cytosol 86.3 84.22
Os06t0608300-01 Rice nucleus 86.41 84.15
KRH20245 Soybean nucleus 85.27 83.98
CDY15566 Canola cytosol 71.88 83.79
KRH03566 Soybean nucleus 85.17 83.7
Zm00001d046549_P002 Maize cytosol 84.35 83.66
TraesCS7D01G376800.1 Wheat cytosol 85.07 83.1
TraesCS7B01G282300.1 Wheat cytosol 85.07 83.1
TraesCS7A01G380300.1 Wheat nucleus 85.07 83.1
PGSC0003DMT400078978 Potato cytosol 84.35 82.98
AT1G06220.2 Thale cress cytosol 82.49 81.16
HORVU7Hr1G090710.6 Barley plastid 82.7 81.11
Bra030642.1-P Field mustard cytosol 82.39 81.05
Bra024798.1-P Field mustard cytosol 82.08 81.0
AT5G25230.1 Thale cress cytosol 80.74 80.58
CDY09982 Canola nucleus 81.98 80.49
CDY69302 Canola cytosol 23.89 72.73
GSMUA_Achr10P... Banana cytosol 30.69 38.65
GSMUA_Achr4P01020_001 Banana cytosol 33.99 37.97
GSMUA_Achr6P22520_001 Banana endoplasmic reticulum, extracellular, vacuole 14.83 32.88
GSMUA_Achr2P17400_001 Banana cytosol 21.52 25.36
GSMUA_Achr5P13570_001 Banana mitochondrion 16.27 21.82
GSMUA_Achr10P... Banana cytosol 15.14 21.21
GSMUA_Achr8P27160_001 Banana mitochondrion 12.56 18.21
GSMUA_Achr3P07220_001 Banana cytosol, nucleus, plastid 9.78 16.84
GSMUA_Achr10P... Banana mitochondrion 11.23 16.15
GSMUA_Achr5P14760_001 Banana plastid 11.12 15.86
Protein Annotations
MapMan:16.4.1.4.2Gene3D:2.40.30.10Gene3D:3.30.230.10Gene3D:3.30.70.240Gene3D:3.30.70.870Gene3D:3.40.50.300
Gene3D:3.90.1430.10InterPro:EFG_III/VInterPro:EFG_V-likeInterPro:EFTUD2_NInterPro:EFTu-like_2GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr4G09280_001EnsemblPlants:GSMUA_Achr4P09280_001EnsemblPlants:GSMUA_Achr4T09280_001InterPro:IPR000795InterPro:IPR014721UniProt:M0SME5
InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF00679PFAM:PF03144PFAM:PF03764PFAM:PF16004
PRINTS:PR00315PFscan:PS51722PANTHER:PTHR42908PANTHER:PTHR42908:SF6InterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838SMART:SM00889SUPFAM:SSF50447SUPFAM:SSF52540SUPFAM:SSF54211SUPFAM:SSF54980
InterPro:Small_GTP-bd_domInterPro:TF_GTP-bd_domTIGRFAMs:TIGR00231InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EFG/EF2_IVInterPro:U5-116kDa_C
UniParc:UPI000294C795SEG:seg::::
Description
116 kDa U5 small nuclear ribonucleoprotein component [Source:GMGC_GENE;Acc:GSMUA_Achr4G09280_001]
Coordinates
chr4:-:6769543..6775525
Molecular Weight (calculated)
108377.0 Da
IEP (calculated)
4.820
GRAVY (calculated)
-0.161
Length
971 amino acids
Sequence
(BLAST)
001: MDDSLYDEFG NYIGPEIESD VGSDASDDDA STVDNAGGPD DMDVDAAASQ IVLAEDKKYY PTAEEVYGEG VETLVMDEDE QPLEQPIIKP VRTLKFEVGV
101: KDSSTYVSTE FLLGLASNPS LVRNVALVGH LQHGKTVFMD MLVEQTHEIS TFDVQNERHI RYTDTRIDEQ ERRISIKAVP MSLVLEDSNA KSYLCNIMDT
201: PGHVNFSDEM TAALRLADGA VLVVDAAEGV MVNTERAIRH AIQERLPIVV VMNKVDRLIT ELKLPPTDAY FKLRHTLEAI NDLISSCSTT VGGTQMVDPV
301: AGNVCFASAN AGWSFTLQSF AKLYLKLHGI PFDSVKFASR LWGDMYYHPD QRVFKKKPPM AGGERSFVQF ILEPLYKIYS QVIGEHKKSV EATLAELGVT
401: LSNAAYKLNV KPLLRLACSS VFGFATGFTD MLVQHIPSAR DAATKKVEHI YTGPQDSYIA EAMKNCDPYG PLMINITKLY PKSDCSVFDA FGRVYSGTIQ
501: TGQTLRVLGE GYSPEDEEDM TVKEVTKLWV YQARYRIPIS KAPAGSWVLI EGVDASIMKT ATLCPLYMDE DVYIFRPLRF NTLSVVKTAT EPLNPSELPK
601: MVEGLRKISK SYPLAITKVE ESGEHTILGT GEIYLDSIMK DLRELYSEVE VKVADPVVTF CETVVETSSM KCFAETPNKR NKITMVAEPL EKGLAEDIEN
701: GVVSIDARQR DISDFFQKRY DWDLLSARSI WAFGPDKQGP NILLDDTLPS EVDKNLLNAV RDSIVQGFQW GAREGPLCDE PIRNVKFKIL NASIAPEPLH
801: RGGGQIIPTA RRVVYSAFLM ANPRLMEPVY YVEIQTPIDC VSAIYTVLSR RRGHVTQDVP KPGTPVYIVK AFLPVIESFG FETDLRYHTQ GQAFCLSVFD
901: HWAIVPGDPL DKNIVLRPLE PAPIQHLARE FMVKTRRRKG MSEDVSINKF FDEAMVVELA QQAADVHLQI M
Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)
001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
Arabidopsis Description
CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.