Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_11s0118g00720.t01 | Wine grape | nucleus | 87.54 | 86.03 |
CDY71233 | Canola | mitochondrion, nucleus | 49.33 | 85.84 |
Solyc07g007210.2.1 | Tomato | nucleus | 81.67 | 85.73 |
CDY70689 | Canola | cytosol | 47.68 | 85.58 |
EER90029 | Sorghum | cytosol | 86.3 | 84.22 |
Os06t0608300-01 | Rice | nucleus | 86.41 | 84.15 |
KRH20245 | Soybean | nucleus | 85.27 | 83.98 |
CDY15566 | Canola | cytosol | 71.88 | 83.79 |
KRH03566 | Soybean | nucleus | 85.17 | 83.7 |
Zm00001d046549_P002 | Maize | cytosol | 84.35 | 83.66 |
TraesCS7D01G376800.1 | Wheat | cytosol | 85.07 | 83.1 |
TraesCS7B01G282300.1 | Wheat | cytosol | 85.07 | 83.1 |
TraesCS7A01G380300.1 | Wheat | nucleus | 85.07 | 83.1 |
PGSC0003DMT400078978 | Potato | cytosol | 84.35 | 82.98 |
AT1G06220.2 | Thale cress | cytosol | 82.49 | 81.16 |
HORVU7Hr1G090710.6 | Barley | plastid | 82.7 | 81.11 |
Bra030642.1-P | Field mustard | cytosol | 82.39 | 81.05 |
Bra024798.1-P | Field mustard | cytosol | 82.08 | 81.0 |
AT5G25230.1 | Thale cress | cytosol | 80.74 | 80.58 |
CDY09982 | Canola | nucleus | 81.98 | 80.49 |
CDY69302 | Canola | cytosol | 23.89 | 72.73 |
GSMUA_Achr10P... | Banana | cytosol | 30.69 | 38.65 |
GSMUA_Achr4P01020_001 | Banana | cytosol | 33.99 | 37.97 |
GSMUA_Achr6P22520_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 14.83 | 32.88 |
GSMUA_Achr2P17400_001 | Banana | cytosol | 21.52 | 25.36 |
GSMUA_Achr5P13570_001 | Banana | mitochondrion | 16.27 | 21.82 |
GSMUA_Achr10P... | Banana | cytosol | 15.14 | 21.21 |
GSMUA_Achr8P27160_001 | Banana | mitochondrion | 12.56 | 18.21 |
GSMUA_Achr3P07220_001 | Banana | cytosol, nucleus, plastid | 9.78 | 16.84 |
GSMUA_Achr10P... | Banana | mitochondrion | 11.23 | 16.15 |
GSMUA_Achr5P14760_001 | Banana | plastid | 11.12 | 15.86 |
Protein Annotations
MapMan:16.4.1.4.2 | Gene3D:2.40.30.10 | Gene3D:3.30.230.10 | Gene3D:3.30.70.240 | Gene3D:3.30.70.870 | Gene3D:3.40.50.300 |
Gene3D:3.90.1430.10 | InterPro:EFG_III/V | InterPro:EFG_V-like | InterPro:EFTUD2_N | InterPro:EFTu-like_2 | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 |
EnsemblPlantsGene:GSMUA_Achr4G09280_001 | EnsemblPlants:GSMUA_Achr4P09280_001 | EnsemblPlants:GSMUA_Achr4T09280_001 | InterPro:IPR000795 | InterPro:IPR014721 | UniProt:M0SME5 |
InterPro:P-loop_NTPase | PFAM:PF00009 | PFAM:PF00679 | PFAM:PF03144 | PFAM:PF03764 | PFAM:PF16004 |
PRINTS:PR00315 | PFscan:PS51722 | PANTHER:PTHR42908 | PANTHER:PTHR42908:SF6 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr |
SMART:SM00838 | SMART:SM00889 | SUPFAM:SSF50447 | SUPFAM:SSF52540 | SUPFAM:SSF54211 | SUPFAM:SSF54980 |
InterPro:Small_GTP-bd_dom | InterPro:TF_GTP-bd_dom | TIGRFAMs:TIGR00231 | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EFG/EF2_IV | InterPro:U5-116kDa_C |
UniParc:UPI000294C795 | SEG:seg | : | : | : | : |
Description
116 kDa U5 small nuclear ribonucleoprotein component [Source:GMGC_GENE;Acc:GSMUA_Achr4G09280_001]
Coordinates
chr4:-:6769543..6775525
Molecular Weight (calculated)
108377.0 Da
IEP (calculated)
4.820
GRAVY (calculated)
-0.161
Length
971 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSLYDEFG NYIGPEIESD VGSDASDDDA STVDNAGGPD DMDVDAAASQ IVLAEDKKYY PTAEEVYGEG VETLVMDEDE QPLEQPIIKP VRTLKFEVGV
101: KDSSTYVSTE FLLGLASNPS LVRNVALVGH LQHGKTVFMD MLVEQTHEIS TFDVQNERHI RYTDTRIDEQ ERRISIKAVP MSLVLEDSNA KSYLCNIMDT
201: PGHVNFSDEM TAALRLADGA VLVVDAAEGV MVNTERAIRH AIQERLPIVV VMNKVDRLIT ELKLPPTDAY FKLRHTLEAI NDLISSCSTT VGGTQMVDPV
301: AGNVCFASAN AGWSFTLQSF AKLYLKLHGI PFDSVKFASR LWGDMYYHPD QRVFKKKPPM AGGERSFVQF ILEPLYKIYS QVIGEHKKSV EATLAELGVT
401: LSNAAYKLNV KPLLRLACSS VFGFATGFTD MLVQHIPSAR DAATKKVEHI YTGPQDSYIA EAMKNCDPYG PLMINITKLY PKSDCSVFDA FGRVYSGTIQ
501: TGQTLRVLGE GYSPEDEEDM TVKEVTKLWV YQARYRIPIS KAPAGSWVLI EGVDASIMKT ATLCPLYMDE DVYIFRPLRF NTLSVVKTAT EPLNPSELPK
601: MVEGLRKISK SYPLAITKVE ESGEHTILGT GEIYLDSIMK DLRELYSEVE VKVADPVVTF CETVVETSSM KCFAETPNKR NKITMVAEPL EKGLAEDIEN
701: GVVSIDARQR DISDFFQKRY DWDLLSARSI WAFGPDKQGP NILLDDTLPS EVDKNLLNAV RDSIVQGFQW GAREGPLCDE PIRNVKFKIL NASIAPEPLH
801: RGGGQIIPTA RRVVYSAFLM ANPRLMEPVY YVEIQTPIDC VSAIYTVLSR RRGHVTQDVP KPGTPVYIVK AFLPVIESFG FETDLRYHTQ GQAFCLSVFD
901: HWAIVPGDPL DKNIVLRPLE PAPIQHLARE FMVKTRRRKG MSEDVSINKF FDEAMVVELA QQAADVHLQI M
101: KDSSTYVSTE FLLGLASNPS LVRNVALVGH LQHGKTVFMD MLVEQTHEIS TFDVQNERHI RYTDTRIDEQ ERRISIKAVP MSLVLEDSNA KSYLCNIMDT
201: PGHVNFSDEM TAALRLADGA VLVVDAAEGV MVNTERAIRH AIQERLPIVV VMNKVDRLIT ELKLPPTDAY FKLRHTLEAI NDLISSCSTT VGGTQMVDPV
301: AGNVCFASAN AGWSFTLQSF AKLYLKLHGI PFDSVKFASR LWGDMYYHPD QRVFKKKPPM AGGERSFVQF ILEPLYKIYS QVIGEHKKSV EATLAELGVT
401: LSNAAYKLNV KPLLRLACSS VFGFATGFTD MLVQHIPSAR DAATKKVEHI YTGPQDSYIA EAMKNCDPYG PLMINITKLY PKSDCSVFDA FGRVYSGTIQ
501: TGQTLRVLGE GYSPEDEEDM TVKEVTKLWV YQARYRIPIS KAPAGSWVLI EGVDASIMKT ATLCPLYMDE DVYIFRPLRF NTLSVVKTAT EPLNPSELPK
601: MVEGLRKISK SYPLAITKVE ESGEHTILGT GEIYLDSIMK DLRELYSEVE VKVADPVVTF CETVVETSSM KCFAETPNKR NKITMVAEPL EKGLAEDIEN
701: GVVSIDARQR DISDFFQKRY DWDLLSARSI WAFGPDKQGP NILLDDTLPS EVDKNLLNAV RDSIVQGFQW GAREGPLCDE PIRNVKFKIL NASIAPEPLH
801: RGGGQIIPTA RRVVYSAFLM ANPRLMEPVY YVEIQTPIDC VSAIYTVLSR RRGHVTQDVP KPGTPVYIVK AFLPVIESFG FETDLRYHTQ GQAFCLSVFD
901: HWAIVPGDPL DKNIVLRPLE PAPIQHLARE FMVKTRRRKG MSEDVSINKF FDEAMVVELA QQAADVHLQI M
001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
Arabidopsis Description
CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.