Factsheet for Solyc07g007210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078978	Potato	cytosol	99.46	93.21
CDY70689	Canola	cytosol	52.97	90.57
CDY71233	Canola	mitochondrion, nucleus	54.49	90.32
VIT_11s0118g00720.t01	Wine grape	nucleus	92.76	86.84
CDY15566	Canola	cytosol	77.84	86.43
KRH03566	Soybean	nucleus	89.84	84.11
KRH20245	Soybean	nucleus	89.62	84.08
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	85.73	81.67
Bra024798.1-P	Field mustard	cytosol	86.27	81.1
Bra030642.1-P	Field mustard	cytosol	86.38	80.95
AT1G06220.2	Thale cress	cytosol	85.95	80.55
CDY09982	Canola	nucleus	85.62	80.08
AT5G25230.1	Thale cress	cytosol	83.68	79.55
EER90029	Sorghum	cytosol	83.03	77.19
Zm00001d046549_P002	Maize	cytosol	80.97	76.51
Os06t0608300-01	Rice	nucleus	82.38	76.43
HORVU7Hr1G090710.6	Barley	plastid	81.73	76.36
TraesCS7A01G380300.1	Wheat	nucleus	81.84	76.16
TraesCS7B01G282300.1	Wheat	cytosol	81.84	76.16
TraesCS7D01G376800.1	Wheat	cytosol	81.84	76.16
CDY69302	Canola	cytosol	22.27	64.58
Solyc08g062920.2.1	Tomato	nucleus, plastid	34.59	38.65
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	31.35	37.66
Solyc11g071770.1.1	Tomato	cytosol	28.32	25.59
Solyc08g079180.2.1	Tomato	plastid	17.73	20.84
Solyc01g090690.2.1	Tomato	plastid	16.43	20.0
Solyc07g053470.2.1	Tomato	mitochondrion	13.08	18.17
Solyc03g058190.2.1	Tomato	plastid	12.32	16.96
Solyc03g058880.2.1	Tomato	mitochondrion	11.35	15.91
Solyc04g015450.2.1	Tomato	nucleus	11.46	15.57

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:IPR000795	InterPro:IPR014721	UniProt:K4CBJ2	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF16004	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	EnsemblPlantsGene:Solyc07g007210.2	EnsemblPlants:Solyc07g007210.2.1
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI000276ABCC

Description

No Description!

Coordinates

chr7:+:1950540..1956871

Molecular Weight (calculated)

103441.0 Da

IEP (calculated)

5.583

GRAVY (calculated)

-0.123

Length

925 amino acids

Sequence
(BLAST)

001: MDNQVVLAED KKYYPTAEEV YGEEVETLVM DEDEQPLEMP IIKPVKNLKF ELGVKDSSTY VSTQFLLGLM SNPALVRNVA LVGHIHHGKT LFMDMLVEQT
101: HHISTFDQNS EKHMRYTDTR IDEQERRISI KSVPMSLVLE DSNSKSYLCN IMDAPGHVNF SDEMTAALRL ADGAVLIVDA VEGVMVNTER AIRHAILERI
201: PIVLVINKVD RLITELKLPP KDAYFKLKHI VETVNSQITA ASSTAGNAQV IDPALGNVCF ASATAGWSFT LQSFAKLYVK LHGIAFDANK FASRLWGDFY
301: FDPDTRSFKK KPPASGVERS FVQFVLEPLY KIYSQVIGEH KKSVEATLAE LGVTLSNAAY RLNVRPLLRL ACSAVFGTAT GFTDMLVHHI PSAKAAAARK
401: VEHIYTGPKD SAIYKAMENC DSAGPLMVNV TKLYPKPDCS VFDAFGRVYS GEIMTGQTVR VLGEGYSPDD EEDMTVKEVT KLWVYQARYR IPISKAPPGA
501: WVLIEGVDAS IMKTATLCNL EFDEDVYIFR PLQFNTLPVV KTATEPLNPS ELPKMVEGLR KISKSYPLAI TKVEESGEHT ILGTGELYLD SIMKDLRELY
601: SEVEVKVADP VVSFCETVVE SSSMKCFAET PNKKNKITMI AEPLERGLAE DIENGVVSID WPRKKLGEFF QTKYDWDLLA ARSIWAFGPD KQGPNILLDD
701: TLSSEVDKSL LNAVKDSIVQ GFQWGAREGP LCDEPIRNVK FKIVDAKIAP EPLHRGTGQI IPTARRVAYS AFLMATPRLM EPVYYVEIQT PMDCLSAIYT
801: VLSRRRGHVT ADVPQPGTPA YIVKAFLPVI ESFGFETDLR YHTQGQAFCL SVFDHWAIVP GDPLDKSIVL RPLEPAPIQH LAREFMVKTR RRKGMSEDVS
901: INKFFDEAMM VELAQQDADL HLQMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.