Factsheet for HORVU7Hr1G090710.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G380300.1	Wheat	nucleus	97.27	96.88
TraesCS7D01G376800.1	Wheat	cytosol	96.97	96.58
TraesCS7B01G282300.1	Wheat	cytosol	96.97	96.58
EER90029	Sorghum	cytosol	91.21	90.75
Os06t0608300-01	Rice	nucleus	91.31	90.67
Zm00001d046549_P002	Maize	cytosol	88.89	89.89
CDY70689	Canola	cytosol	45.96	84.1
CDY71233	Canola	mitochondrion, nucleus	47.27	83.87
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	81.11	82.7
Solyc07g007210.2.1	Tomato	nucleus	76.36	81.73
CDY15566	Canola	cytosol	67.78	80.55
VIT_11s0118g00720.t01	Wine grape	nucleus	78.38	78.54
KRH20245	Soybean	nucleus	76.57	76.88
KRH03566	Soybean	nucleus	76.57	76.72
PGSC0003DMT400078978	Potato	cytosol	76.46	76.7
Bra030642.1-P	Field mustard	cytosol	74.85	75.08
AT1G06220.2	Thale cress	cytosol	74.75	74.97
Bra024798.1-P	Field mustard	cytosol	74.44	74.9
CDY09982	Canola	nucleus	74.75	74.82
AT5G25230.1	Thale cress	cytosol	73.03	74.31
CDY69302	Canola	cytosol	19.9	61.76
HORVU3Hr1G057890.1	Barley	cytosol	32.22	37.84
HORVU3Hr1G057880.1	Barley	cytosol	32.22	37.84
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	32.02	37.6
HORVU7Hr1G106150.1	Barley	cytosol	31.92	37.49
HORVU5Hr1G116710.1	Barley	cytosol	21.72	36.63
HORVU1Hr1G003960.9	Barley	cytosol	25.35	27.22
HORVU2Hr1G092180.1	Barley	plastid	16.67	21.63
HORVU5Hr1G092260.1	Barley	nucleus, plastid	25.35	21.53
HORVU7Hr1G082910.2	Barley	mitochondrion	14.95	19.53
HORVU6Hr1G050160.1	Barley	plastid	10.1	18.76
HORVU1Hr1G009320.1	Barley	nucleus	16.36	18.12
HORVU6Hr1G025110.1	Barley	plastid	9.49	17.6
HORVU3Hr1G072230.1	Barley	plastid	11.92	16.98
HORVU7Hr1G019550.9	Barley	mitochondrion	10.91	16.17
HORVU6Hr1G025120.1	Barley	cytosol	0.91	8.33

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	UniProt:A0A287XAB1	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:HORVU7Hr1G090710	EnsemblPlants:HORVU7Hr1G090710.6	InterPro:IPR000795	InterPro:IPR014721	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF16004	PRINTS:PR00315
PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838
SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C	UniParc:UPI000B467802
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:552700772..552706893

Molecular Weight (calculated)

107116.0 Da

IEP (calculated)

5.517

GRAVY (calculated)

-0.168

Length

990 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXSPSPS QSRSPSPARS PSGSPGSRRP AALMDVDDDD YADAAQNAVV LAEDKKYYPT AEEVYGPGVE ALVMDEDEQA
101: LEKPIVAPPR VVKFEVGTRA GATSTYASTD FILGLASNPL LVRNVALVGH LQHGKTVFMD MLVEQTHEVD TFDSEGERHI RFTDTRVDEQ ERRVSIKAVP
201: MSLVLESGNG KSYLCNIMDT PGHVNFSDEM TAALRLADGA VLVVDAAEGV MVNTERAIRH AIQERLPIVV VINKVDRLIT ELKLPPNDAY FKLRHTLDTI
301: NDLISSCSTT VGGTQLVDPA AGNVCFASGS AGWSFTLQSF AHLYLKIHGI QFDHEKFASR LWGDLYYDHN SRTFKKKPPA AGANRSFIEF ILEPLYKIYS
401: QVVGEQQRIL EVTLADLGVT LSNAAYKLNV RPLLRLACRS IFGTATGFTD MLVKNIPNVK DGAARKIEHI YTGQQDSSIV DAMKKCDSHG PLMVNVTKLY
501: PKPDCSVFDA FGRVYSGTIQ TGQTVRVLGE GYSPDDEEDM TVKEVTKLWV YQARYRVPIS KAPAGSWVLI EGVDASIMKT ATICPMNMDE DVYIFRPLRF
601: NTLPVVKIAA EPLNPSELPK MVEGLRKISK SYPLAITKVE ESGEHTILGT GELYLDSIMK DLRELYSEVE VKVADPVVTF CETVVDTSSM KCFAETPNKR
701: NKITMLAEPL EKGLAEDIEN GLVSLDSRQK EVTDFFRQRY QWDVLAARSI WAFGPDKQGP NILLDDSLSV EVDKNLLNAV KDSIVQGFQW GAREGPLCDE
801: PIRNVKFKIL NANIAPEPLH RGGGQIIPTA RRVVYSAFLM ANPRLMEPVY YIEIQTPIDC VSAIYTVLSR RRGHVTADVP KPGTPVYVVK AFLPVIESFG
901: FETDLRYHTQ GQAFCVSVFD HWAIVPGDPL DKGIVLRPLE PAPIQHLARE FMVKTRRRKG MSEDVSINKF FDEAMMNELA QQTADINLMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.