Factsheet for Bra030642.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15566	Canola	cytosol	84.19	99.76
Bra024798.1-P	Field mustard	cytosol	99.19	99.49
AT1G06220.2	Thale cress	cytosol	95.04	95.04
AT5G25230.1	Thale cress	cytosol	91.19	92.5
VIT_11s0118g00720.t01	Wine grape	nucleus	87.64	87.55
Solyc07g007210.2.1	Tomato	nucleus	80.95	86.38
KRH20245	Soybean	nucleus	85.41	85.5
KRH03566	Soybean	nucleus	85.31	85.22
PGSC0003DMT400078978	Potato	cytosol	84.8	84.8
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	81.05	82.39
Zm00001d046549_P002	Maize	cytosol	77.51	78.14
EER90029	Sorghum	cytosol	78.72	78.09
Os06t0608300-01	Rice	nucleus	78.12	77.33
TraesCS7D01G376800.1	Wheat	cytosol	77.31	76.76
TraesCS7B01G282300.1	Wheat	cytosol	77.2	76.66
TraesCS7A01G380300.1	Wheat	nucleus	77.2	76.66
HORVU7Hr1G090710.6	Barley	plastid	75.08	74.85
Bra010781.1-P	Field mustard	cytosol	23.1	41.3
Bra010782.1-P	Field mustard	cytosol	33.33	39.03
Bra017279.1-P	Field mustard	cytosol	33.33	37.47
Bra020542.1-P	Field mustard	cytosol	34.14	35.66
Bra033543.1-P	Field mustard	cytosol	23.1	25.05
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	11.55	23.7
Bra027021.1-P	Field mustard	plastid	17.53	22.32
Bra004884.1-P	Field mustard	plastid	14.89	19.47
Bra028444.1-P	Field mustard	mitochondrion	12.36	18.46
Bra021694.1-P	Field mustard	mitochondrion	11.96	18.1
Bra022824.1-P	Field mustard	mitochondrion	11.55	18.07
Bra008811.1-P	Field mustard	plastid	11.55	16.91
Bra028651.1-P	Field mustard	plastid	11.45	16.52

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EnsemblPlantsGene:Bra030642	EnsemblPlants:Bra030642.1	EnsemblPlants:Bra030642.1-P	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTUD2_N	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795	InterPro:IPR014721	UniProt:M4EPC2
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF16004
PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF6	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	InterPro:U5-116kDa_C
UniParc:UPI0002547114	SEG:seg	:	:	:	:

Description

AT1G06220 (E=0.0) MEE5 | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding

Coordinates

chrA08:-:20973841..20977688

Molecular Weight (calculated)

110391.0 Da

IEP (calculated)

4.753

GRAVY (calculated)

-0.263

Length

987 amino acids

Sequence
(BLAST)

001: MDDSLYDEFG NYIGPEIESD RESDDEIEDS EFQDKHPEED GSDGEHPPGG SNGWITTIND VEMDNQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: MPIIKPVRDV RFEVGVKDST TYVSTQFLVG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNVVDTPGHV NFSDEMTASL RLSDGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGNL PLIDPAAGNV CFASGTAGWS FTLQSFAKLY SKLHGVDMDV DKFASKLWGD VYYHPDTRAF KRNPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS SSGFTDMLVK HIPSPKEAAA RKVDHAYTGP KDSAIYEAMV ECDPSGPLMV NVTKLFPKSD
501: TSVFDVFGRV YSGTLQTGQS VRVLGEGYSP EDEEDMTVKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NENYDEDVFI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFKTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDK NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDAWI APEPLHRGSG QMIPTARRVA YSSFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CVSVFDHWAI VPGDPLDKSI LLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.