Factsheet for TraesCS7A01G380300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G376800.1	Wheat	cytosol	99.7	99.7
TraesCS7B01G282300.1	Wheat	cytosol	99.5	99.5
HORVU7Hr1G090710.6	Barley	plastid	96.88	97.27
EER90029	Sorghum	cytosol	93.76	93.67
Os06t0608300-01	Rice	nucleus	93.86	93.58
Zm00001d046549_P002	Maize	cytosol	91.45	92.85
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	83.1	85.07
CDY70689	Canola	cytosol	45.88	84.29
CDY71233	Canola	mitochondrion, nucleus	47.18	84.05
Solyc07g007210.2.1	Tomato	nucleus	76.16	81.84
VIT_11s0118g00720.t01	Wine grape	nucleus	80.38	80.87
CDY15566	Canola	cytosol	67.61	80.67
KRH20245	Soybean	nucleus	78.47	79.11
KRH03566	Soybean	nucleus	78.57	79.05
PGSC0003DMT400078978	Potato	cytosol	78.27	78.82
Bra030642.1-P	Field mustard	cytosol	76.66	77.2
CDY09982	Canola	nucleus	76.66	77.05
Bra024798.1-P	Field mustard	cytosol	76.26	77.03
AT1G06220.2	Thale cress	cytosol	76.26	76.8
AT5G25230.1	Thale cress	cytosol	74.55	76.16
CDY69302	Canola	cytosol	21.73	67.71
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	5.03	40.0
TraesCS2A01G234500.1	Wheat	cytosol	4.93	39.2
TraesCS3A01G232300.1	Wheat	cytosol, golgi	32.09	37.84
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	31.79	37.49
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	31.79	37.49
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	31.79	37.49
TraesCS7A01G288600.1	Wheat	cytosol	4.53	36.89
TraesCS4A01G363900.1	Wheat	plastid	24.04	36.38
TraesCS1A01G027600.1	Wheat	cytosol	25.45	29.94
TraesCS5A01G370800.1	Wheat	cytosol	25.65	24.4
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	23.74	23.84
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	16.6	21.48
TraesCS7A01G336600.4	Wheat	mitochondrion	15.09	19.23
TraesCS3A01G291600.1	Wheat	mitochondrion	12.17	17.98
TraesCS6A01G192800.1	Wheat	plastid	11.57	17.06
TraesCS4A01G386100.3	Wheat	mitochondrion	11.07	16.52
TraesCS7A01G087200.1	Wheat	mitochondrion	10.97	16.37
TraesCS6A01G130900.1	Wheat	plastid	10.87	16.12

Protein Annotations

MapMan:16.4.1.4.2	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTUD2_N	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:IPR000795	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF16004	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF6
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540
SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS7A01G380300
EnsemblPlants:TraesCS7A01G380300.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:-:555665230..555670853

Molecular Weight (calculated)

110261.0 Da

IEP (calculated)

5.033

GRAVY (calculated)

-0.190

Length

994 amino acids

Sequence
(BLAST)

001: MDDSLYDEFG NYIGPELADS DADDSDAAAS PSPSQSRSPS PARSPSGSPN SRRPAALMDV DDDDYADAAQ NAVVLAEDKK YYPTAEEVYG PGVEALVMDE
101: DEQALEKPIV APPRVVKFEV GTRAGATSTY ASTDFILGLA SNPLLVRNVA LVGHLQHGKT VFMDMLVEQT HEVDTFDSEG ERHIRFTDTR VDEQERRVSI
201: KAVPMSLVLE SGNGKSYLCN IMDTPGHVNF SDEMTAALRL ADGAVLVVDA AEGVMVNTER AIRHAIQERL PIVVVINKVD RLITELKLPP NDAYFKLRHT
301: LDTINDLISS CSTTVGGTQL VDPAAGNVCF ASGSAGWSFT LQSFAHLYLK IHGIQFDHEK FASRLWGDLY YDHNSRTFKK KPPAAGANRS FIEFILEPLY
401: KIYSQVVGEQ QRILEVTLAD LGVTLSNAAY KLNVRPLLRL ACRSIFGTAT GFTDMLVKNI PNVKDGAARK IEHIYTGQQD SSIVDAMKKC DSHGPLMVNV
501: TKLYPKPDCS VFDAFGRVYS GTIQTGQTVR VLGEGYSPDD EEDMTVKEVT KLWVYQARYR VPISKAPAGS WVLIEGVDAS IMKTATICPM NMDEDVYIFR
601: PLRFNTLPVV KIAAEPLNPS ELPKMVEGLR KISKSYPLAI TKVEESGEHT ILGTGELYLD SIMKDLRELY SEVEVKVADP VVTFCETVVD TSSMKCFAET
701: PNKRNKITML AEPLEKGLAE DIENGLVSLD SRQKEVTDFF RQRYQWDVLA ARSIWAFGPD KQGPNILLDD SLSVEVDKNL LNAVKDSIVQ GFQWGAREGP
801: LCDEPIRNVK FKILNANIAP EPLHRGGGQI IPTARRVVYS AFLMANPRLM EPVYYIEIQT PIDCVSAIYT VLSRRRGHVT ADVPKPGTPV YVVKAFLPVI
901: ESFGFETDLR YHTQGQAFCV SVFDHWAIVP GDPLDKGIVL RPLEPAPIQH LAREFMVKTR RRKGMSEDVS INKFFDEAMM NELAQQTADI HLMM

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.