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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • nucleus 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY71233 Canola mitochondrion, nucleus 54.61 96.59
CDY70689 Canola cytosol 52.79 96.3
CDY15566 Canola cytosol 81.26 96.28
AT5G25230.1 Thale cress cytosol 94.83 96.2
Bra030642.1-P Field mustard cytosol 95.04 95.04
Bra024798.1-P Field mustard cytosol 94.43 94.72
CDY09982 Canola nucleus 94.43 94.24
CDY69302 Canola cytosol 29.38 90.91
VIT_11s0118g00720.t01 Wine grape nucleus 87.54 87.45
Solyc07g007210.2.1 Tomato nucleus 80.55 85.95
KRH20245 Soybean nucleus 85.51 85.6
KRH03566 Soybean nucleus 85.51 85.43
PGSC0003DMT400078978 Potato cytosol 83.99 83.99
GSMUA_Achr4P09280_001 Banana cytosol, nucleus, plastid 81.16 82.49
EER90029 Sorghum cytosol 78.12 77.49
Zm00001d046549_P002 Maize cytosol 76.8 77.43
Os06t0608300-01 Rice nucleus 77.71 76.93
TraesCS7D01G376800.1 Wheat cytosol 76.9 76.36
TraesCS7A01G380300.1 Wheat nucleus 76.8 76.26
TraesCS7B01G282300.1 Wheat cytosol 76.8 76.26
HORVU7Hr1G090710.6 Barley plastid 74.97 74.75
AT1G56070.2 Thale cress cytosol 32.52 38.08
AT3G12915.2 Thale cress cytosol 30.19 37.82
AT3G22980.2 Thale cress cytosol 25.23 24.53
AT1G62750.1 Thale cress plastid 17.33 21.84
AT2G45030.1 Thale cress mitochondrion 15.81 20.69
AT1G45332.1 Thale cress mitochondrion 15.6 20.42
AT5G39900.1 Thale cress mitochondrion 12.26 18.25
AT2G31060.3 Thale cress mitochondrion 12.16 17.88
AT5G13650.2 Thale cress plastid 11.65 17.01
AT5G08650.1 Thale cress plastid 11.35 16.45
Protein Annotations
MapMan:16.4.1.4.2Gene3D:2.40.30.10Gene3D:3.30.230.10Gene3D:3.30.70.240Gene3D:3.30.70.870Gene3D:3.40.50.300
Gene3D:3.90.1430.10EntrezGene:837131ProteinID:AAF80219.1ProteinID:AEE27961.1ProteinID:AEE27962.1EMBL:AK226591
ProteinID:ANM58878.1ArrayExpress:AT1G06220EnsemblPlantsGene:AT1G06220RefSeq:AT1G06220TAIR:AT1G06220RefSeq:AT1G06220-TAIR-G
EnsemblPlants:AT1G06220.2TAIR:AT1G06220.2Unigene:At.15476InterPro:EFG_III/VInterPro:EFG_V-likeInterPro:EFTUD2_N
InterPro:EFTu-like_2GO:GO:0000003GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003746GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005515GO:GO:0005525
GO:GO:0005575GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654
GO:GO:0005681GO:GO:0005886GO:GO:0006139GO:GO:0006397GO:GO:0006412GO:GO:0006414
GO:GO:0007275GO:GO:0008135GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009058
GO:GO:0009790GO:GO:0009791GO:GO:0009793GO:GO:0009908GO:GO:0009987GO:GO:0016020
GO:GO:0016607GO:GO:0016787GO:GO:0019538GO:GO:0030154GO:GO:0030312GO:GO:0045694
GO:GO:0048437InterPro:IPR000795InterPro:IPR014721Symbol:MEE5RefSeq:NP_001321282.1RefSeq:NP_172112.1
RefSeq:NP_849600.1InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF00679PFAM:PF03144PFAM:PF03764
PFAM:PF16004PO:PO:0000003PO:PO:0000005PO:PO:0000293PRINTS:PR00315PFscan:PS51722
PANTHER:PTHR42908PANTHER:PTHR42908:SF6UniProt:Q9LNC5InterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrSMART:SM00838
SMART:SM00889SUPFAM:SSF50447SUPFAM:SSF52540SUPFAM:SSF54211SUPFAM:SSF54980InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_domTIGRFAMs:TIGR00231InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EFG/EF2_IVInterPro:U5-116kDa_CUniParc:UPI00000A859B
SEG:seg:::::
Description
CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
Coordinates
chr1:+:1899951..1904897
Molecular Weight (calculated)
110448.0 Da
IEP (calculated)
4.820
GRAVY (calculated)
-0.263
Length
987 amino acids
Sequence
(BLAST)
001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.