Factsheet for AT1G56070.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49975	Canola	cytosol	45.79	96.74
Bra010782.1-P	Field mustard	cytosol	96.44	96.44
CDX90241	Canola	cytosol, extracellular	90.27	96.21
CDY05533	Canola	cytosol	74.38	96.02
Bra010781.1-P	Field mustard	cytosol	62.87	96.01
CDY70516	Canola	cytosol	57.89	95.87
CDY32072	Canola	cytosol	73.07	95.21
Solyc08g062920.2.1	Tomato	nucleus, plastid	91.93	93.6
KRH13696	Soybean	nucleus	93.59	93.59
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	85.41	93.51
KRH43759	Soybean	nucleus	93.24	93.24
CDY24982	Canola	endoplasmic reticulum, vacuole	92.41	92.96
CDY70526	Canola	nucleus	9.37	92.94
GSMUA_Achr10P...	Banana	cytosol	84.7	92.61
Bra017279.1-P	Field mustard	cytosol	96.44	92.6
OQU75622	Sorghum	cytosol	37.13	92.33
CDY40423	Canola	cytosol	85.88	91.99
KXG37185	Sorghum	cytosol	91.93	91.93
Zm00001d012770_P001	Maize	plastid	91.93	91.93
KXG37183	Sorghum	cytosol	91.93	91.93
EES01455	Sorghum	cytosol	91.81	91.81
Zm00001d034771_P002	Maize	cytosol	91.7	91.7
Zm00001d034773_P001	Maize	cytosol	91.7	91.7
Zm00001d034776_P001	Maize	cytosol	91.7	91.7
VIT_19s0027g00760.t01	Wine grape	cytosol	92.65	91.56
TraesCS3D01G220900.1	Wheat	golgi	91.46	91.46
TraesCS5D01G509700.1	Wheat	cytosol	89.44	91.39
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	91.34	91.34
TraesCS3A01G232300.1	Wheat	cytosol, golgi	91.34	91.34
TraesCS7D01G449300.1	Wheat	cytosol	91.34	91.34
AT3G12915.2	Thale cress	cytosol	85.29	91.24
HORVU7Hr1G106150.1	Barley	cytosol	91.22	91.22
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	91.22	91.22
TraesCS7B01G362600.1	Wheat	cytosol	91.22	91.22
TraesCS5D01G509600.1	Wheat	cytosol	91.22	91.22
TraesCS3B01G261500.1	Wheat	cytosol	91.1	91.1
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	91.1	91.1
HORVU3Hr1G057890.1	Barley	cytosol	91.1	91.1
HORVU3Hr1G057880.1	Barley	cytosol	91.1	91.1
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	91.1	91.1
TraesCS5B01G509600.1	Wheat	cytosol, golgi	91.1	91.1
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	90.87	90.87
TraesCS5B01G509700.1	Wheat	cytosol, golgi	90.87	90.87
CDY49974	Canola	nucleus	9.13	90.59
TraesCS5D01G509800.1	Wheat	cytosol	47.92	90.38
GSMUA_Achr4P01020_001	Banana	cytosol	91.58	88.84
Os01t0742200-01	Rice	cytosol, nucleus	86.6	88.38
TraesCS4A01G363900.1	Wheat	plastid	67.97	87.21
Bra020542.1-P	Field mustard	cytosol	96.44	86.03
TraesCS2A01G234500.1	Wheat	cytosol	12.69	85.6
TraesCS7A01G288600.1	Wheat	cytosol	12.34	85.25
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	12.57	84.8
HORVU5Hr1G116710.1	Barley	cytosol	58.72	84.33
KRH43761	Soybean	cytosol, nucleus, plastid	18.39	77.5
KRH13693	Soybean	mitochondrion	74.73	76.18
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	38.91	74.89
KRH13692	Soybean	cytosol, mitochondrion	60.97	71.89
Zm00001d020342_P001	Maize	mitochondrion	33.69	71.18
CDY54261	Canola	nucleus	18.51	67.83
TraesCS1D01G023700.1	Wheat	cytosol	61.21	61.36
TraesCS1A01G027600.1	Wheat	cytosol	59.07	58.93
TraesCS1D01G026800.1	Wheat	cytosol	48.16	58.33
TraesCSU01G002600.1	Wheat	cytosol	58.6	57.24
TraesCS1B01G033500.1	Wheat	cytosol	25.62	53.6
HORVU1Hr1G003960.9	Barley	cytosol	57.06	52.17
Os05t0467501-00	Rice	cytosol	27.05	50.0
AT5G25230.1	Thale cress	cytosol	37.72	32.68
AT1G06220.2	Thale cress	cytosol	38.08	32.52
AT3G22980.2	Thale cress	cytosol	34.88	28.97
AT1G62750.1	Thale cress	plastid	21.47	23.12
AT2G45030.1	Thale cress	mitochondrion	19.57	21.88
AT1G45332.1	Thale cress	mitochondrion	19.57	21.88
AT2G31060.3	Thale cress	mitochondrion	15.78	19.82
AT5G39900.1	Thale cress	mitochondrion	15.3	19.46
AT5G13650.2	Thale cress	plastid	14.83	18.49
AT5G08650.1	Thale cress	plastid	14.83	18.36

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EntrezGene:842058	UniProt:A0A178WBS0	ProteinID:AAF02837.1	ProteinID:AEE33338.1	EMBL:AF367331
EMBL:AK220706	EMBL:AK221896	EMBL:AK221900	EMBL:AK319019	ProteinID:ANM58611.1	ProteinID:ANM58612.1
ArrayExpress:AT1G56070	EnsemblPlantsGene:AT1G56070	RefSeq:AT1G56070	TAIR:AT1G56070	RefSeq:AT1G56070-TAIR-G	EnsemblPlants:AT1G56070.2
EMBL:AY035011	EMBL:AY054461	Unigene:At.47544	EMBL:BT000661	EMBL:BT000722	EMBL:BT000786
EMBL:BT002714	EMBL:BT006187	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005507	GO:GO:0005525	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0005886	GO:GO:0006412	GO:GO:0006414	GO:GO:0006950
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009506
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009631	GO:GO:0009719	GO:GO:0009735
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	GO:GO:0048046	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	Symbol:LOS1	RefSeq:NP_001321033.1	RefSeq:NP_001321034.1	RefSeq:NP_849818.1
ProteinID:OAP15808.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11
UniProt:Q9ASR1	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI00000AC340	SEG:seg	:	:

Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]

Coordinates

chr1:-:20967801..20971742

Molecular Weight (calculated)

93896.5 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.228

Length

843 amino acids

Sequence
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.