Factsheet for TraesCSU01G002600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G033500.1	Wheat	cytosol	44.73	95.78
TraesCS1D01G026800.1	Wheat	cytosol	67.67	83.91
TraesCS1A01G027600.1	Wheat	cytosol	81.58	83.31
HORVU1Hr1G003960.9	Barley	cytosol	85.05	79.61
CDY49975	Canola	cytosol	29.43	63.66
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	54.46	61.04
GSMUA_Achr10P...	Banana	cytosol	54.46	60.96
KRH43759	Soybean	nucleus	58.63	60.02
KRH13696	Soybean	nucleus	58.29	59.67
Solyc08g062920.2.1	Tomato	nucleus, plastid	56.89	59.3
VIT_19s0027g00760.t01	Wine grape	cytosol	58.52	59.2
Bra010782.1-P	Field mustard	cytosol	57.71	59.07
AT1G56070.2	Thale cress	cytosol	57.24	58.6
GSMUA_Achr4P01020_001	Banana	cytosol	58.98	58.57
Bra010781.1-P	Field mustard	cytosol	37.31	58.33
CDY40423	Canola	cytosol	53.07	58.2
CDX90241	Canola	cytosol, extracellular	53.19	58.03
AT3G12915.2	Thale cress	cytosol	52.61	57.61
CDY70516	Canola	cytosol	33.72	57.17
CDY05533	Canola	cytosol	42.87	56.66
Bra017279.1-P	Field mustard	cytosol	57.47	56.49
CDY32072	Canola	cytosol	42.29	56.41
CDY24982	Canola	endoplasmic reticulum, vacuole	54.11	55.73
KRH13693	Soybean	mitochondrion	51.45	53.69
Bra020542.1-P	Field mustard	cytosol	57.59	52.59
KRH43761	Soybean	cytosol, nucleus, plastid	12.05	52.0
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	26.19	51.6
KRH13692	Soybean	cytosol, mitochondrion	40.79	49.23
CDY49974	Canola	nucleus	4.17	42.35
CDY70526	Canola	nucleus	4.06	41.18
Os05t0467501-00	Rice	cytosol	20.97	39.69
CDY54261	Canola	nucleus	9.15	34.35

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	Gene3D:3.90.1430.10
MapMan:35.1	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR000795
InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:TF_GTP-bd_dom	EnsemblPlantsGene:TraesCSU01G002600	EnsemblPlants:TraesCSU01G002600.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681
TIGR:cd16268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:2569485..2572401

Molecular Weight (calculated)

95214.4 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.117

Length

863 amino acids

Sequence
(BLAST)

001: MVNFTQVELR EMMGKKNNIR NVSLIAHLSH GKSTLTESLV AAAGMIRHEG DVEVPMADTH ADVAQPAMSI RSAGTSLLYE MNNESFKSYK GERDGDQYLV
101: NLIDSPGHTD FSSEVTTALR VTDGALLVID AIEGVCMQTE AVLCQALNEM VRPILCVNKM DKLFPDLQVE SANPESVGHK LFSGLQDEGA KPESMGERAY
201: KILSNVVENS NEIMKAHGAE RLGDVQVYPE TSSVAFASGL HGWAFTIASF AKKYALKCGV DETKFAKRLW GDNFYDSAKK KWTRKNSGSD NCIRGFVRFC
301: YNPIDTVLMA CMNDNKGELW DLCQKLEVSL RDDEKDLTGM ALVKCVMQTW LPASTALLEM MICHLPSPLE AQKYRVENLY EGPLDDKYAE AIKKCDPEGP
401: LMLYVSKMVP ASDVGRFFAF GRVFSGRIAA GMKVRVMGPS YVPGMETDLH VESVQRTIIW MGKKQCDVPD VPCGNTVGLI GLDACITKSA TLTSEKEVVA
501: RPIRAMKLSV CPLMFVTINC KVPSESPKLV QGLKRLAMSD PVVLWSKVEP GTYTVAGVGE LHLEICLKDL QEEFMDGVEV VSSPPVVSFR ETICKSCDPV
601: ERMSRNKQIQ CSLSVVARPL DENLVEAIED GRLGPRTDHA VRSEILAKHG WDKDLGDNIW CFGPDAVGPN VIVNRCNNII QNLELAKKVI VAGFEMVGKE
701: GALAKEKLHG ICFEVHNVNI HADEALKGTT AQLNKMVRTA LIESQLAAKP RLLEPTYIVA IQCPKSALST IYGILHQRNG SVYEEFVREG TMLHILKAYV
801: PVYDSFGLSK AISAATSELV TPQCIFGYWS DMCSDPFQAN APAGQMVLDI RKRKKMGRPS FQK

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.