CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70526	Canola	nucleus	13.14	100.0
CDY05533	Canola	cytosol	99.07	98.16
CDY49974	Canola	nucleus	12.67	96.47
CDY70516	Canola	cytosol	72.33	91.94
TraesCS2A01G234500.1	Wheat	cytosol	16.69	86.4
TraesCS7A01G288600.1	Wheat	cytosol	16.23	86.07
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	16.54	85.6
TraesCS4A01G363900.1	Wheat	plastid	82.23	80.97
CDX90241	Canola	cytosol, extracellular	98.92	80.91
HORVU5Hr1G116710.1	Barley	cytosol	71.1	78.36
CDY24982	Canola	endoplasmic reticulum, vacuole	98.76	76.25
AT1G56070.2	Thale cress	cytosol	95.21	73.07
Bra017279.1-P	Field mustard	cytosol	99.07	73.01
CDY40423	Canola	cytosol	87.79	72.17
KRH13696	Soybean	nucleus	93.51	71.77
KRH43759	Soybean	nucleus	93.04	71.41
Solyc08g062920.2.1	Tomato	nucleus, plastid	91.04	71.14
CDY54261	Canola	nucleus	25.19	70.87
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	91.65	70.34
VIT_19s0027g00760.t01	Wine grape	cytosol	92.58	70.22
TraesCS5D01G509600.1	Wheat	cytosol	91.34	70.11
TraesCS5B01G509600.1	Wheat	cytosol, golgi	91.34	70.11
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	91.34	70.11
KXG37183	Sorghum	cytosol	91.34	70.11
KXG37185	Sorghum	cytosol	91.34	70.11
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	91.34	70.11
Zm00001d034776_P001	Maize	cytosol	91.19	69.99
Zm00001d034773_P001	Maize	cytosol	91.19	69.99
Zm00001d012770_P001	Maize	plastid	91.19	69.99
TraesCS7D01G449300.1	Wheat	cytosol	91.19	69.99
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	91.04	69.87
TraesCS7B01G362600.1	Wheat	cytosol	91.04	69.87
EES01455	Sorghum	cytosol	91.04	69.87
HORVU7Hr1G106150.1	Barley	cytosol	91.04	69.87
TraesCS3A01G232300.1	Wheat	cytosol, golgi	90.88	69.75
Zm00001d034771_P002	Maize	cytosol	90.88	69.75
TraesCS3D01G220900.1	Wheat	golgi	90.88	69.75
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	90.88	69.75
TraesCS5B01G509700.1	Wheat	cytosol, golgi	90.88	69.75
TraesCS5D01G509700.1	Wheat	cytosol	88.87	69.7
Zm00001d020342_P001	Maize	mitochondrion	42.97	69.67
TraesCS3B01G261500.1	Wheat	cytosol	90.73	69.63
HORVU3Hr1G057890.1	Barley	cytosol	90.57	69.51
HORVU3Hr1G057880.1	Barley	cytosol	90.57	69.51
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	82.38	69.22
AT3G12915.2	Thale cress	cytosol	83.77	68.78
GSMUA_Achr10P...	Banana	cytosol	81.76	68.61
GSMUA_Achr4P01020_001	Banana	cytosol	91.5	68.12
Os01t0742200-01	Rice	cytosol, nucleus	84.39	66.1
CDY49975	Canola	cytosol	39.72	64.41
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	42.19	62.33
KRH43761	Soybean	cytosol, nucleus, plastid	18.24	59.0
KRH13693	Soybean	mitochondrion	74.65	58.4
TraesCS1B01G033500.1	Wheat	cytosol	33.54	53.85
TraesCS1D01G026800.1	Wheat	cytosol	57.19	53.16
KRH13692	Soybean	cytosol, mitochondrion	55.8	50.49
TraesCS5D01G509800.1	Wheat	cytosol	34.47	49.89
OQU75622	Sorghum	cytosol	25.04	47.79
TraesCS1D01G023700.1	Wheat	cytosol	56.57	43.52
TraesCS1A01G027600.1	Wheat	cytosol	56.26	43.08
TraesCSU01G002600.1	Wheat	cytosol	56.41	42.29
HORVU1Hr1G003960.9	Barley	cytosol	54.71	38.39
CDY70689	Canola	cytosol	31.22	37.34
CDY71233	Canola	mitochondrion, nucleus	31.53	36.56
Os05t0467501-00	Rice	cytosol	23.03	32.68
CDY15566	Canola	cytosol	39.1	30.37
CDY09982	Canola	nucleus	39.26	25.68
CDY10337	Canola	cytosol	17.62	24.05
CDY10688	Canola	cytosol	31.07	23.05
CDY32224	Canola	cytosol	18.24	22.91
CDY32225	Canola	nucleus	12.52	22.88
CDY46917	Canola	plastid	18.7	15.61
CDY31838	Canola	plastid	18.7	15.61
CDX74705	Canola	plastid	16.23	13.91
CDY18957	Canola	plastid	16.23	13.89
CDY23967	Canola	cytosol	2.32	12.93
CDX84803	Canola	mitochondrion	11.59	12.02
CDY19061	Canola	mitochondrion	12.06	11.66
CDY54484	Canola	mitochondrion	12.06	11.66
CDY44781	Canola	plastid	9.74	9.33
CDY40739	Canola	plastid	9.74	9.21
CDX91105	Canola	plastid	9.58	9.2
CDX67441	Canola	plastid	9.74	9.18
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	9.74	9.16
CDY65992	Canola	plastid	9.43	9.05
CDY09816	Canola	plastid	9.43	9.04
CDX78349	Canola	cytosol	3.09	8.66
CDX85635	Canola	plastid	9.43	8.62
CDY69302	Canola	cytosol	2.01	4.08

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
GO:A0A078H3N0	UniProt:A0A078H3N0	EnsemblPlants:CDY32072	ProteinID:CDY32072	ProteinID:CDY32072.1	InterPro:EFG_III/V
InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
EnsemblPlantsGene:GSBRNA2T00051420001	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838
SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0004EECFA5	:	:	:	:

Description

BnaC04g44940DBnaC04g44940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3N0]

Coordinates

chrLK032287:+:108857..111206

Molecular Weight (calculated)

72535.0 Da

IEP (calculated)

6.730

GRAVY (calculated)

-0.248

Length

647 amino acids

Sequence
(BLAST)

001: MDRCFLELQV DGEEAYQNFQ RVIENANVIM ATYEDPLLGD VQVYPEKGTV AFSAGLHGWA FTLTNFAKMY ASKFGVDETK MMERLWGENF FDPATKKWSS
101: KNTGSATCKR GFVLFCYEPI KQIIATCMND QKDKLWPMLQ KLGVQMKSDE KELMGKPLMK RVMQAWLPAS TALLEMMIFH LPSPHTAQRY RVENLFFAFG
201: RVFSGKVSTG MKVRIMGPNF VPGEKKDLYV KSVQRTVIWM GKRQETVEDV PCGNTVAMVG LDQFITKNAT LTNEKEVDAH PIRAMKFSVS PVVRVAVQCK
301: VASDLPKLVE GLKRLAKSDP MVVCTMEESG EHIVAGAGEL HLEICLKDLQ DDFMGGAEIV KSDPVVSFRE TVLERSVRTV MSKSPNKHNR LYMEARPLED
401: GLAEAIDDGR IGPRDDPKIR SKILAEEFGW DKDLAKKIWA FGPETTGPNM VVDMCKGVQY LNEIKDSVVA GFQWASKEGP LCDENMRGIC FEVCDVVLHS
501: DAIHRGGGQV IPTARRVIYA SQLTAKPRLL EPVYMVEIQA PEGALGGIYS VLNQKRGHVF EEMQRPGTPL YNIKAYLPVV ESFGFSSQLR AATSGQAFPQ
601: CVFDHWEMMS SDPLETGSQA STLVADIRKR KGMKEQMTPL SDFEDKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.