Factsheet for TraesCS5B01G509500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
nucleus: 28628250

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28628250 doi

T Bonnot, E Bancel, D Alvarez, M Davanture, J Boudet, M Pailloux, M Zivy, C Ravel, P Martre

LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	100.0	100.0
TraesCS5D01G509600.1	Wheat	cytosol	99.88	99.88
TraesCS5B01G509600.1	Wheat	cytosol, golgi	99.88	99.88
TraesCS7B01G362600.1	Wheat	cytosol	98.93	98.93
TraesCS5B01G509700.1	Wheat	cytosol, golgi	98.7	98.7
TraesCS3B01G261500.1	Wheat	cytosol	94.54	94.54
GSMUA_Achr10P...	Banana	cytosol	85.53	93.51
HORVU5Hr1G116710.1	Barley	cytosol	64.77	93.02
KRH43759	Soybean	nucleus	92.88	92.88
KRH13696	Soybean	nucleus	92.76	92.76
Solyc08g062920.2.1	Tomato	nucleus, plastid	90.98	92.63
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	84.22	92.21
CDX90241	Canola	cytosol, extracellular	86.36	92.04
CDY49975	Canola	cytosol	43.53	91.98
Bra010782.1-P	Field mustard	cytosol	91.81	91.81
CDY05533	Canola	cytosol	70.94	91.58
CDY70516	Canola	cytosol	55.16	91.36
CDY32072	Canola	cytosol	70.11	91.34
VIT_19s0027g00760.t01	Wine grape	cytosol	92.29	91.21
AT1G56070.2	Thale cress	cytosol	91.1	91.1
Bra010781.1-P	Field mustard	cytosol	59.55	90.94
GSMUA_Achr4P01020_001	Banana	cytosol	92.88	90.1
CDY49974	Canola	nucleus	9.02	89.41
CDY70526	Canola	nucleus	8.9	88.24
AT3G12915.2	Thale cress	cytosol	82.33	88.07
CDY24982	Canola	endoplasmic reticulum, vacuole	87.54	88.07
Bra017279.1-P	Field mustard	cytosol	91.22	87.59
CDY40423	Canola	cytosol	81.61	87.42
Bra020542.1-P	Field mustard	cytosol	91.34	81.48
KRH43761	Soybean	cytosol, nucleus, plastid	18.62	78.5
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	39.98	76.94
KRH13693	Soybean	mitochondrion	74.5	75.94
KRH13692	Soybean	cytosol, mitochondrion	59.43	70.07
CDY54261	Canola	nucleus	17.91	65.65
TraesCS1B01G033500.1	Wheat	cytosol	26.93	56.33
TraesCS7B01G282300.1	Wheat	cytosol	37.6	31.89
TraesCS5B01G373200.1	Wheat	cytosol	34.28	27.66
TraesCS1B01G062700.1	Wheat	cytosol	32.27	27.04
TraesCS2B01G404600.1	Wheat	plastid	21.47	23.57
TraesCS7B01G248200.1	Wheat	mitochondrion	19.1	21.24
TraesCS3B01G326200.1	Wheat	mitochondrion	15.66	19.61
TraesCS6B01G224800.2	Wheat	plastid	15.3	19.11
TraesCS6B01G159200.1	Wheat	plastid	14.95	18.81

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS5B01G509500	EnsemblPlants:TraesCS5B01G509500.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	TIGR:cd01885
TIGR:cd04096	TIGR:cd16261	TIGR:cd16268	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:674889789..674895109

Molecular Weight (calculated)

93783.6 Da

IEP (calculated)

6.030

GRAVY (calculated)

-0.183

Length

843 amino acids

Sequence
(BLAST)

001: MVKFTAEELR GIMDKKNNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLFYQ MTPESLEMYK GDRDGDEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVE GEEAYQTFSR VIENANVIMA TYEDVLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDEAKM MERLWGENFF DPATKKWTSK NTGTATCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLKK
301: LGVTMKNDEK DLMGKALMKR VMQTWLPASR ALLEMMIFHL PSPSKAQRYR VENLYEGPLD DIYANAIRNC DPDGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GRVATGMKVR IMGPNFVPGQ KKDLYVKSVQ RTVIWMGKKQ ESVEDVPCGN TVALVGLDQF ITKNATLTNE KEVDACPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVLC SIEESGEHII AGAGELHLEI CLKDLQEDFM GGAEIIVSPP VVSFRETVLE KSCRTVMSKS PNKHNRLYME ARPLEEGLAE
601: AIDDGRIGPR DDPKVRSKIL SEEFGWDKDL AKKIWCFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRGICFEVC DVVLHTDAIH
701: RGGGQVIPTA RRVIYASQLT AKPRLLEPVY LVEIQAPENA LGGIYGVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVIESFG FSSTLRAATS GQAFPQCVFD
801: HWDIMSSDPL EAGSQSATLV TEIRKRKGLK EQMTPLSDFE DKL

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.