Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49974 | Canola | nucleus | 35.65 | 96.47 |
| CDY70526 | Canola | nucleus | 35.22 | 95.29 |
| CDY70516 | Canola | cytosol | 71.3 | 32.22 |
| Zm00001d020342_P001 | Maize | mitochondrion | 48.26 | 27.82 |
| HORVU5Hr1G116710.1 | Barley | cytosol | 65.65 | 25.72 |
| CDY32072 | Canola | cytosol | 70.87 | 25.19 |
| CDY05533 | Canola | cytosol | 70.87 | 24.96 |
| TraesCS4A01G363900.1 | Wheat | plastid | 63.48 | 22.22 |
| CDX90241 | Canola | cytosol, extracellular | 71.74 | 20.86 |
| CDY24982 | Canola | endoplasmic reticulum, vacuole | 71.3 | 19.57 |
| TraesCS1B01G033500.1 | Wheat | cytosol | 33.91 | 19.35 |
| AT3G12915.2 | Thale cress | cytosol | 64.78 | 18.91 |
| AT1G56070.2 | Thale cress | cytosol | 67.83 | 18.51 |
| TraesCS5D01G509700.1 | Wheat | cytosol | 65.65 | 18.3 |
| KXG37185 | Sorghum | cytosol | 66.09 | 18.03 |
| KXG37183 | Sorghum | cytosol | 66.09 | 18.03 |
| EES01455 | Sorghum | cytosol | 66.09 | 18.03 |
| TraesCS5B01G509500.1 | Wheat | cytosol, golgi, nucleus | 65.65 | 17.91 |
| TraesCS4A01G363800.1 | Wheat | cytosol, nucleus, plastid | 65.65 | 17.91 |
| TraesCS5B01G509600.1 | Wheat | cytosol, golgi | 65.65 | 17.91 |
| TraesCS5D01G509600.1 | Wheat | cytosol | 65.65 | 17.91 |
| HORVU5Hr1G116580.1 | Barley | cytosol, plasma membrane | 65.65 | 17.91 |
| Zm00001d012770_P001 | Maize | plastid | 65.65 | 17.91 |
| HORVU3Hr1G057890.1 | Barley | cytosol | 65.65 | 17.91 |
| HORVU3Hr1G057880.1 | Barley | cytosol | 65.65 | 17.91 |
| Zm00001d034773_P001 | Maize | cytosol | 65.65 | 17.91 |
| Zm00001d034776_P001 | Maize | cytosol | 65.65 | 17.91 |
| TraesCS3B01G261500.1 | Wheat | cytosol | 65.22 | 17.79 |
| TraesCS3D01G220900.1 | Wheat | golgi | 65.22 | 17.79 |
| TraesCS3A01G232300.1 | Wheat | cytosol, golgi | 65.22 | 17.79 |
| Zm00001d034771_P002 | Maize | cytosol | 65.22 | 17.79 |
| KRH43759 | Soybean | nucleus | 64.78 | 17.68 |
| KRH13696 | Soybean | nucleus | 64.78 | 17.68 |
| VIT_19s0027g00760.t01 | Wine grape | cytosol | 64.78 | 17.47 |
| TraesCS5B01G509700.1 | Wheat | cytosol, golgi | 63.91 | 17.44 |
| TraesCS7D01G449300.1 | Wheat | cytosol | 63.91 | 17.44 |
| TraesCS4A01G363700.1 | Wheat | cytosol, golgi, unclear | 63.91 | 17.44 |
| TraesCS7A01G461100.1 | Wheat | cytosol, nucleus, unclear | 63.48 | 17.32 |
| HORVU7Hr1G106150.1 | Barley | cytosol | 63.48 | 17.32 |
| TraesCS7B01G362600.1 | Wheat | cytosol | 63.48 | 17.32 |
| Solyc08g062920.2.1 | Tomato | nucleus, plastid | 60.43 | 16.79 |
| GSMUA_Achr4P01020_001 | Banana | cytosol | 63.04 | 16.69 |
| CDY32225 | Canola | nucleus | 25.22 | 16.38 |
| CDY70689 | Canola | cytosol | 37.39 | 15.9 |
| CDY71233 | Canola | mitochondrion, nucleus | 37.39 | 15.41 |
| Os01t0742200-01 | Rice | cytosol, nucleus | 53.91 | 15.01 |
| GSMUA_Achr10P... | Banana | cytosol | 47.83 | 14.27 |
| KRH13693 | Soybean | mitochondrion | 49.57 | 13.78 |
| GSMUA_Achr6P22520_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 25.65 | 13.47 |
| KRH13692 | Soybean | cytosol, mitochondrion | 40.87 | 13.15 |
| CDY40423 | Canola | cytosol | 40.87 | 11.94 |
| TraesCS1D01G026800.1 | Wheat | cytosol | 34.35 | 11.35 |
| Solyc08g062910.2.1 | Tomato | cytosol, extracellular, nucleus, unclear | 37.83 | 11.3 |
| CDY23967 | Canola | cytosol | 5.65 | 11.21 |
| TraesCS1D01G023700.1 | Wheat | cytosol | 38.7 | 10.58 |
| CDY15566 | Canola | cytosol | 37.39 | 10.32 |
| TraesCS1A01G027600.1 | Wheat | cytosol | 33.91 | 9.23 |
| TraesCSU01G002600.1 | Wheat | cytosol | 34.35 | 9.15 |
| CDY09982 | Canola | nucleus | 37.39 | 8.7 |
| HORVU1Hr1G003960.9 | Barley | cytosol | 30.43 | 7.59 |
| CDY10688 | Canola | cytosol | 25.22 | 6.65 |
| KRH43761 | Soybean | cytosol, nucleus, plastid | 4.35 | 5.0 |
| CDX78349 | Canola | cytosol | 4.78 | 4.76 |
| CDY46917 | Canola | plastid | 14.35 | 4.26 |
| CDY31838 | Canola | plastid | 14.35 | 4.26 |
| CDX74705 | Canola | plastid | 13.48 | 4.11 |
| CDY18957 | Canola | plastid | 13.48 | 4.1 |
| CDY19061 | Canola | mitochondrion | 8.26 | 2.84 |
| CDY54484 | Canola | mitochondrion | 8.26 | 2.84 |
| CDX84803 | Canola | mitochondrion | 7.39 | 2.72 |
| CDY44781 | Canola | plastid | 6.96 | 2.37 |
| CDY40739 | Canola | plastid | 6.96 | 2.34 |
| CDY65992 | Canola | plastid | 6.52 | 2.23 |
| CDX91105 | Canola | plastid | 6.52 | 2.23 |
| CDY09816 | Canola | plastid | 6.52 | 2.22 |
| CDX85635 | Canola | plastid | 6.52 | 2.12 |
| CDX67441 | Canola | plastid | 4.78 | 1.6 |
| CDY65319 | Canola | endoplasmic reticulum, plastid, vacuole | 4.78 | 1.6 |
| TraesCS6A01G189500.1 | Wheat | cytosol, nucleus, plastid | 0.43 | 0.8 |
| TraesCS2A01G234500.1 | Wheat | cytosol | 0.43 | 0.8 |
| CDY10337 | Canola | cytosol | 0.43 | 0.21 |
| CDY32224 | Canola | cytosol | 0.43 | 0.19 |
| TraesCS7A01G288600.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS5D01G509800.1 | Wheat | cytosol | 0.0 | 0.0 |
| Os05t0467501-00 | Rice | cytosol | 0.0 | 0.0 |
| OQU75622 | Sorghum | cytosol | 0.0 | 0.0 |
| CDY69302 | Canola | cytosol | 0.0 | 0.0 |
| CDY49975 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.230.10 | Gene3D:3.30.70.240 | MapMan:35.1 | GO:A0A078IW72 | UniProt:A0A078IW72 | EnsemblPlants:CDY54261 |
| ProteinID:CDY54261 | ProteinID:CDY54261.1 | InterPro:EFG_III/V | InterPro:EFG_V-like | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005525 | EnsemblPlantsGene:GSBRNA2T00013733001 | InterPro:IPR014721 | PFAM:PF00679 | PFAM:PF03764 |
| PANTHER:PTHR42908 | PANTHER:PTHR42908:SF11 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | SMART:SM00838 | SUPFAM:SSF54211 |
| SUPFAM:SSF54980 | InterPro:Transl_elong_EFG/EF2_IV | UniParc:UPI0004EE67C4 | : | : | : |
Description
BnaCnng26590DBnaCnng26590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW72]
Coordinates
chrLK033297:+:9808..10789
Molecular Weight (calculated)
26101.7 Da
IEP (calculated)
8.717
GRAVY (calculated)
-0.251
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MILRSVPRSW QRSLEGPLCD ENMRGICSEV CDVVLHSDAI HRGGGQVIPT ARRVIYTSQL TAKPRLLEPV YMVEIQAPKG ALGRIYNVLN QKRGHVFKEM
101: QRPGTPLYNI KAYLPVVESF GFSSQLRAAT SGQAFPQCVF DHWEMMSSDP LEAGSQASTL VTDIRKRKGM KEQMTPWSNF EDKLWLQQQQ PARPSLFIST
201: LSSYYHVFII TFLDDVMHCD LGMLVSKPNH
101: QRPGTPLYNI KAYLPVVESF GFSSQLRAAT SGQAFPQCVF DHWEMMSSDP LEAGSQASTL VTDIRKRKGM KEQMTPWSNF EDKLWLQQQQ PARPSLFIST
201: LSSYYHVFII TFLDDVMHCD LGMLVSKPNH
001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
Arabidopsis Description
CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.