Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G002600.1 | Wheat | cytosol | 79.61 | 85.05 |
| TraesCS1B01G033500.1 | Wheat | cytosol | 36.44 | 83.37 |
| TraesCS1A01G027600.1 | Wheat | cytosol | 71.48 | 77.99 |
| TraesCS1D01G026800.1 | Wheat | cytosol | 58.13 | 77.01 |
| CDY49975 | Canola | cytosol | 27.01 | 62.41 |
| Solyc08g062910.2.1 | Tomato | cytosol, extracellular, nucleus, unclear | 50.0 | 59.87 |
| GSMUA_Achr10P... | Banana | cytosol | 49.67 | 59.4 |
| HORVU5Hr1G116580.1 | Barley | cytosol, plasma membrane | 54.23 | 59.31 |
| HORVU3Hr1G057880.1 | Barley | cytosol | 54.01 | 59.07 |
| HORVU3Hr1G057890.1 | Barley | cytosol | 54.01 | 59.07 |
| HORVU7Hr1G106150.1 | Barley | cytosol | 54.01 | 59.07 |
| KRH43759 | Soybean | nucleus | 53.69 | 58.72 |
| KRH13696 | Soybean | nucleus | 53.36 | 58.36 |
| Solyc08g062920.2.1 | Tomato | nucleus, plastid | 52.06 | 57.97 |
| VIT_19s0027g00760.t01 | Wine grape | cytosol | 53.58 | 57.91 |
| Bra010782.1-P | Field mustard | cytosol | 52.71 | 57.65 |
| CDY40423 | Canola | cytosol | 49.13 | 57.56 |
| Bra010781.1-P | Field mustard | cytosol | 34.16 | 57.07 |
| AT1G56070.2 | Thale cress | cytosol | 52.17 | 57.06 |
| GSMUA_Achr4P01020_001 | Banana | cytosol | 53.69 | 56.96 |
| CDX90241 | Canola | cytosol, extracellular | 48.26 | 56.26 |
| AT3G12915.2 | Thale cress | cytosol | 47.61 | 55.71 |
| CDY70516 | Canola | cytosol | 30.48 | 55.21 |
| Bra017279.1-P | Field mustard | cytosol | 52.39 | 55.01 |
| CDY05533 | Canola | cytosol | 38.94 | 54.98 |
| HORVU5Hr1G116710.1 | Barley | cytosol | 34.92 | 54.86 |
| CDY32072 | Canola | cytosol | 38.39 | 54.71 |
| CDY24982 | Canola | endoplasmic reticulum, vacuole | 49.24 | 54.18 |
| KRH13693 | Soybean | mitochondrion | 47.51 | 52.96 |
| GSMUA_Achr6P22520_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 24.73 | 52.05 |
| Bra020542.1-P | Field mustard | cytosol | 52.49 | 51.22 |
| KRH43761 | Soybean | cytosol, nucleus, plastid | 10.95 | 50.5 |
| KRH13692 | Soybean | cytosol, mitochondrion | 37.2 | 47.97 |
| Os05t0467501-00 | Rice | cytosol | 19.31 | 39.04 |
| CDY49974 | Canola | nucleus | 2.93 | 31.76 |
| CDY70526 | Canola | nucleus | 2.82 | 30.59 |
| CDY54261 | Canola | nucleus | 7.59 | 30.43 |
| HORVU7Hr1G090710.6 | Barley | plastid | 27.22 | 25.35 |
| HORVU5Hr1G092260.1 | Barley | nucleus, plastid | 25.81 | 20.41 |
| HORVU7Hr1G082910.2 | Barley | mitochondrion | 15.94 | 19.39 |
| HORVU2Hr1G092180.1 | Barley | plastid | 15.84 | 19.14 |
| HORVU1Hr1G009320.1 | Barley | nucleus | 17.35 | 17.9 |
| HORVU6Hr1G025110.1 | Barley | plastid | 10.3 | 17.79 |
| HORVU3Hr1G072230.1 | Barley | plastid | 13.23 | 17.55 |
| HORVU6Hr1G050160.1 | Barley | plastid | 9.98 | 17.26 |
| HORVU7Hr1G019550.9 | Barley | mitochondrion | 11.82 | 16.32 |
| HORVU6Hr1G025120.1 | Barley | cytosol | 0.87 | 7.41 |
Protein Annotations
| Gene3D:2.40.30.10 | Gene3D:3.30.230.10 | Gene3D:3.30.70.240 | Gene3D:3.30.70.870 | Gene3D:3.40.50.300 | Gene3D:3.90.1430.10 |
| MapMan:35.1 | UniProt:A0A287EHU8 | InterPro:EFG_III/V | InterPro:EFG_V-like | InterPro:EFTu-like_2 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 |
| EnsemblPlantsGene:HORVU1Hr1G003960 | EnsemblPlants:HORVU1Hr1G003960.9 | InterPro:IPR000795 | InterPro:IPR014721 | InterPro:P-loop_NTPase | PFAM:PF00009 |
| PFAM:PF00679 | PFAM:PF03144 | PFAM:PF03764 | PFAM:PF14492 | PRINTS:PR00315 | PFscan:PS51722 |
| PANTHER:PTHR42908 | PANTHER:PTHR42908:SF11 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | SMART:SM00889 | SUPFAM:SSF50447 |
| SUPFAM:SSF52540 | SUPFAM:SSF54211 | SUPFAM:SSF54980 | InterPro:TF_GTP-bd_dom | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EFG/EF2_IV |
| UniParc:UPI000B472A52 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:8479853..8483952
Molecular Weight (calculated)
101711.0 Da
IEP (calculated)
5.005
GRAVY (calculated)
-0.016
Length
922 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKFTQVELR EMMDKKKNIR NVSVIAHLSH GKSTLTESLV AAAGMIRHGG DVQVPMAGSH ADVAEPAMSI RSAGTSLLYE MKNDSFKSCK GERDGDKYLV
101: NLIDSPGHTD FSSEVTTALR VTDGAMLVID ALEGVCMQTE AVLCQALNEM VKPVLCLNKM DKLFPALQIE SAKPESIEGK LFPALQDDGA EPESMGEEAY
201: RILSNVIENS NEIVKACDAE RLGDVQVYPE TSSVAFASGL HGWAFTIASF AKKYALKYGV DEAKFAKRLW GDYFFDSTTK EWTSKNSGPD RCIRGFVQLC
301: YSPINTVLMA CMNDNKGELW DLCHKLGVNL RDDEKDLTGL ALVKCVMQTW LPASTALLEM MICHLPSPLE AQEYRVENLY EGPLDDKYAE AIKQCDPEGP
401: LMLYVSKMVP ASDVGRFFAF GRVFSGRIAA GMKVRVMGPS YVPSMETDLF VESVQRTIIW MGKNQCDVPD VPCGNTVGLI GLDASITKSA TLTSEKEVDA
501: HPIRAMKLPV CPLMFVTVNC KVLFESPKLV QGLKRLAMSD PVVLWSKIEP GTYTVAGVGE LHLEICLKDL QNDFMDGVEV VVSSPPVVSF RETVRKSCDP
601: VKSVPRNNKI QCSLSLVARP LHEKLVDAIE DGRFGPRTDH VVRSEILSKH GWDKDLGDKI WCFGPDAVGP NVIVNRCNIK QNDLELAKEA IVAGFEMVAK
701: EGALAKERMH GICFEVHDVS IRVDEALRGK TAQLNEMVRT ALIECQLAAK PRLLEPTYTV AIQCPESALS TIYGILHQRK ASVYEDFVRE ETTLHILKAY
801: VSVYDSFGLS KAISTATNKL VMPQCIFEEW SDMCSDPFQA KCTGWANGLG YPQEEEDGQA LFPEVALALI DLTYVCCCCD LACSEVHSLL IDVELRNIAA
901: GYGRHIFDMI VGVLYVVMCA QL
101: NLIDSPGHTD FSSEVTTALR VTDGAMLVID ALEGVCMQTE AVLCQALNEM VKPVLCLNKM DKLFPALQIE SAKPESIEGK LFPALQDDGA EPESMGEEAY
201: RILSNVIENS NEIVKACDAE RLGDVQVYPE TSSVAFASGL HGWAFTIASF AKKYALKYGV DEAKFAKRLW GDYFFDSTTK EWTSKNSGPD RCIRGFVQLC
301: YSPINTVLMA CMNDNKGELW DLCHKLGVNL RDDEKDLTGL ALVKCVMQTW LPASTALLEM MICHLPSPLE AQEYRVENLY EGPLDDKYAE AIKQCDPEGP
401: LMLYVSKMVP ASDVGRFFAF GRVFSGRIAA GMKVRVMGPS YVPSMETDLF VESVQRTIIW MGKNQCDVPD VPCGNTVGLI GLDASITKSA TLTSEKEVDA
501: HPIRAMKLPV CPLMFVTVNC KVLFESPKLV QGLKRLAMSD PVVLWSKIEP GTYTVAGVGE LHLEICLKDL QNDFMDGVEV VVSSPPVVSF RETVRKSCDP
601: VKSVPRNNKI QCSLSLVARP LHEKLVDAIE DGRFGPRTDH VVRSEILSKH GWDKDLGDKI WCFGPDAVGP NVIVNRCNIK QNDLELAKEA IVAGFEMVAK
701: EGALAKERMH GICFEVHDVS IRVDEALRGK TAQLNEMVRT ALIECQLAAK PRLLEPTYTV AIQCPESALS TIYGILHQRK ASVYEDFVRE ETTLHILKAY
801: VSVYDSFGLS KAISTATNKL VMPQCIFEEW SDMCSDPFQA KCTGWANGLG YPQEEEDGQA LFPEVALALI DLTYVCCCCD LACSEVHSLL IDVELRNIAA
901: GYGRHIFDMI VGVLYVVMCA QL
001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI
Arabidopsis Description
CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.