Factsheet for GSMUA_Achr4P01020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	85.5	96.37
KRH43759	Soybean	nucleus	91.6	94.42
EES01455	Sorghum	cytosol	91.48	94.31
KXG37185	Sorghum	cytosol	91.48	94.31
KXG37183	Sorghum	cytosol	91.48	94.31
KRH13696	Soybean	nucleus	91.48	94.31
Zm00001d012770_P001	Maize	plastid	91.37	94.19
Zm00001d034776_P001	Maize	cytosol	91.14	93.95
Zm00001d034773_P001	Maize	cytosol	91.14	93.95
Zm00001d034771_P002	Maize	cytosol	91.14	93.95
OQU75622	Sorghum	cytosol	36.48	93.51
TraesCS3D01G220900.1	Wheat	golgi	90.68	93.48
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	82.74	93.38
Solyc08g062920.2.1	Tomato	nucleus, plastid	88.95	93.36
HORVU3Hr1G057890.1	Barley	cytosol	90.56	93.36
HORVU3Hr1G057880.1	Barley	cytosol	90.56	93.36
TraesCS3B01G261500.1	Wheat	cytosol	90.33	93.12
TraesCS3A01G232300.1	Wheat	cytosol, golgi	90.33	93.12
TraesCS5D01G509600.1	Wheat	cytosol	90.22	93.0
TraesCS5B01G509600.1	Wheat	cytosol, golgi	90.22	93.0
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	90.1	92.88
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	90.1	92.88
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	90.1	92.88
TraesCS5D01G509700.1	Wheat	cytosol	88.15	92.85
CDY49975	Canola	cytosol	42.58	92.73
HORVU7Hr1G106150.1	Barley	cytosol	89.64	92.41
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	89.64	92.41
TraesCS7D01G449300.1	Wheat	cytosol	89.53	92.29
CDX90241	Canola	cytosol, extracellular	84.0	92.29
VIT_19s0027g00760.t01	Wine grape	cytosol	90.56	92.26
TraesCS7B01G362600.1	Wheat	cytosol	89.41	92.17
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	89.41	92.17
TraesCS5B01G509700.1	Wheat	cytosol, golgi	89.3	92.05
Bra010782.1-P	Field mustard	cytosol	89.3	92.05
AT1G56070.2	Thale cress	cytosol	88.84	91.58
CDY05533	Canola	cytosol	68.81	91.58
CDY32072	Canola	cytosol	68.12	91.5
CDY70516	Canola	cytosol	53.51	91.36
Bra010781.1-P	Field mustard	cytosol	57.88	91.12
Os01t0742200-01	Rice	cytosol, nucleus	86.42	90.92
TraesCS5D01G509800.1	Wheat	cytosol	46.61	90.6
TraesCS4A01G363900.1	Wheat	plastid	67.2	88.89
CDY24982	Canola	endoplasmic reticulum, vacuole	85.62	88.78
AT3G12915.2	Thale cress	cytosol	80.44	88.71
Bra017279.1-P	Field mustard	cytosol	89.3	88.38
CDY40423	Canola	cytosol	79.86	88.18
TraesCS2A01G234500.1	Wheat	cytosol	12.66	88.0
TraesCS7A01G288600.1	Wheat	cytosol	12.31	87.7
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	12.54	87.2
CDY70526	Canola	nucleus	8.52	87.06
HORVU5Hr1G116710.1	Barley	cytosol	58.69	86.88
CDY49974	Canola	nucleus	8.29	84.71
Bra020542.1-P	Field mustard	cytosol	89.53	82.33
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	39.7	78.77
KRH13693	Soybean	mitochondrion	73.42	77.15
KRH43761	Soybean	cytosol, nucleus, plastid	17.72	77.0
Zm00001d020342_P001	Maize	mitochondrion	33.6	73.18
KRH13692	Soybean	cytosol, mitochondrion	59.49	72.31
CDY54261	Canola	nucleus	16.69	63.04
TraesCS1D01G023700.1	Wheat	cytosol	60.53	62.54
TraesCS1A01G027600.1	Wheat	cytosol	59.26	60.95
TraesCS1D01G026800.1	Wheat	cytosol	48.22	60.2
TraesCSU01G002600.1	Wheat	cytosol	58.57	58.98
TraesCS1B01G033500.1	Wheat	cytosol	25.78	55.58
HORVU1Hr1G003960.9	Barley	cytosol	56.96	53.69
Os05t0467501-00	Rice	cytosol	26.81	51.1
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	37.97	33.99
GSMUA_Achr2P17400_001	Banana	cytosol	27.39	28.88
GSMUA_Achr5P13570_001	Banana	mitochondrion	19.22	23.07
GSMUA_Achr10P...	Banana	cytosol	17.95	22.51
GSMUA_Achr8P27160_001	Banana	mitochondrion	15.3	19.85
GSMUA_Achr5P14760_001	Banana	plastid	14.84	18.94
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	12.08	18.62
GSMUA_Achr10P...	Banana	mitochondrion	14.38	18.52

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr4G01020_001
EnsemblPlants:GSMUA_Achr4P01020_001	EnsemblPlants:GSMUA_Achr4T01020_001	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721	UniProt:M0SK19
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV
UniParc:UPI000296BCC1	:	:	:	:	:

Description

Elongation factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G01020_001]

Coordinates

chr4:+:839527..845490

Molecular Weight (calculated)

96917.2 Da

IEP (calculated)

6.199

GRAVY (calculated)

-0.219

Length

869 amino acids

Sequence
(BLAST)

001: MGRWLCVYKY TARGLTCDCG GVSSDLMVKF TAEELRRIMD MKHNIRNMSV IAHVDHGKST LTDSLVAAAG IIAQEVAGDV RMTDTRQDEA ERGITIKSTG
101: ISLYYEMTEE SLKNYKGERS GNEYLINLID SPGHVDFSSE VTAALRITDG ALVVVDCIEG VCVQTETVLR QALGERIRPV LTVNKMDRCF LELQVDGEEA
201: YQTFQRVIEN ANVIMATYED PLLGDVQVYP EKGTVAFSAG LHGWAFTLTN FAKMYAAKFG VDESKMMERL WGENYFDPAT KKWTSKNTGS GTCKRGFVQF
301: CYEPIRQIIS TCINDQKDKL WPMLQKLGVT MKSEEKELVG KALMKRVMQT WLPASTALLE MMIFHLPSPA KAQKYRVENL YEGPLDDIYA NAIRNCDPEG
401: PLMLYVSKMI PASDKGRFFA FGRVFSGRVA TGMKVRIMGP NYVPGQKKDL YVKSVQRTVI WMGKRQESVE DVPCGNTVAM VGLDQYITKN ATLTNEKEVD
501: AHPIRAMKFS VSPVVRVAVQ CKVASDLPKL VEGLKRLAKS DPMVVCTMEE SGEHIVAGAG ELHLEICLKD LQEDFMGGAE IVVSDPVVSF RETVLEKSCR
601: TVMSKSPNKH NRLYMEARPM EEGLAEAIDE GRIGPRDDPK VRSKILSEEF GWDKDLAKKI WCFGPETTGP NMVVDMCKGV QYLNEIKDSV VAGFQWASKE
701: GAVAEENMRA ICFEVCDVVL HADAIHRGGG QIIPTARRVI YASQLTAKPR LLEPVYLVEI QAPEQALGGI YGVLNQKRGH VFEELQRPGT PLYNIKAYLP
801: VIESFGFSST LRAATSGQAF PQCVFDHWDM MSSDPLETGS QAGQLVSEIR KRKGLKEQIT PLSEFEDKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.