Factsheet for GSMUA_Achr5P13570_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
vacuole 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	26.52	91.0
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	17.68	90.78
Os04t0538100-01	Rice	plasma membrane	46.69	87.56
VIT_00s0323g00080.t01	Wine grape	plastid	84.12	78.58
KRH57341	Soybean	nucleus, plastid	84.39	78.33
Bra027021.1-P	Field mustard	plastid	83.43	77.94
CDY31838	Canola	plastid	83.43	77.94
CDY46917	Canola	plastid	83.43	77.94
Solyc08g079180.2.1	Tomato	plastid	84.25	77.51
AT1G62750.1	Thale cress	plastid	83.7	77.39
KRH04069	Soybean	nucleus, plastid	83.98	77.26
Zm00001d025948_P001	Maize	plastid	81.91	77.21
PGSC0003DMT400012076	Potato	cytosol, plastid	83.84	77.13
Zm00001d002822_P001	Maize	plastid	81.22	76.46
EES12566	Sorghum	plastid	81.35	76.0
TraesCS2B01G404600.1	Wheat	plastid	80.52	75.91
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	80.39	75.78
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	80.39	75.78
HORVU2Hr1G092180.1	Barley	plastid	79.01	74.97
GSMUA_Achr10P...	Banana	cytosol	41.44	43.29
GSMUA_Achr10P...	Banana	cytosol	22.79	21.4
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	12.85	21.23
GSMUA_Achr4P01020_001	Banana	cytosol	23.07	19.22
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	13.67	17.55
GSMUA_Achr5P14760_001	Banana	plastid	16.02	17.03
GSMUA_Achr10P...	Banana	mitochondrion	15.75	16.89
GSMUA_Achr8P27160_001	Banana	mitochondrion	15.61	16.87
GSMUA_Achr4P09280_001	Banana	cytosol, nucleus, plastid	21.82	16.27
GSMUA_Achr2P17400_001	Banana	cytosol	16.16	14.2

Protein Annotations

MapMan:17.7.4.3	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
InterPro:EFG_III	InterPro:EFG_III/V	InterPro:EFG_V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005524	GO:GO:0005525	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006412	GO:GO:0006414	GO:GO:0007275
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009658	GO:GO:0009791	GO:GO:0009845	GO:GO:0009941	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0048046	GO:GO:0070125	EnsemblPlantsGene:GSMUA_Achr5G13570_001
EnsemblPlants:GSMUA_Achr5P13570_001	EnsemblPlants:GSMUA_Achr5T13570_001	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721	UniProt:M0SY86
HAMAP:MF_00054_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PRINTS:PR00315	PRINTS:PR01037	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43261
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540
SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EFG/EF2	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI000296315A	SEG:seg	:	:

Description

Elongation factor G, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G13570_001]

Coordinates

chr5:-:9745986..9750864

Molecular Weight (calculated)

79615.3 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.185

Length

724 amino acids

Sequence
(BLAST)

001: MAGETMRITA SATCGGLHGP RRRLLPLAPR RGLLGPNYFF TAGLRHAAAS DLFGSLRLRS SPAAPALQEK CRRVPVVSMA GDETKRQVPL KDYRNIGIMA
101: HIDAGKTTTT ERVLYYTGRN YKIGEVHEGT ATMDWMEQEQ ERGITITSAA TTTFWNNHRI NIIDTPGHVD FTLEVERALR VLDGAICLFD SVAGVEPQSE
201: TVWRQADKYG VPRICFVNKM DRLGANFFRT RDMIVTNLGA RPLVIQLPVG AEDKFQGVVD LLKMKAIIWS GEELVMEKYL EGIEPDEQTM KQLIRKGTIS
301: GCFVPVLCGS AFKNKGVQPL LDAVVTIERP PSDDEPFAGL AFKIMSDPFV GSLTFVRVYS GMLSAGSYVL NANKGKKERI GRLLEMHANS REDVKVALTG
401: DIVALAGLKD TITGETLCDP EKPIVLERMD FPDPVIKVAI EPKTKADVDK MAIGLIKLAQ EDPSFHFSRD EETNQTVIEG MGELHLEIIV DRLKREFKVE
501: ANVGAPQVNY RESISKISEV QYIHKKQSGG QGQFADITVR FEPLEPGSGY EFKSEIKGGA VPKEYIPGVM KGLEECISNG VLAGYPVVDV RAALVDGSYH
601: EVDSSVLAFQ LAARGAFRDG MRKAGPKLLE PIMKVEVVTP EEHLGDVIGD LNSRRGQINS FGDKPGGLKV VDALVPLAEM FQYVSTLRGM TKGRASYTMQ
701: LAQFDVVPQH IQNQLSAKQE AVSA

Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)

001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA

Arabidopsis Description

CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.