Factsheet for Zm00001d025948_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002822_P001	Maize	plastid	96.74	96.62
EES12566	Sorghum	plastid	96.48	95.61
Os04t0538100-01	Rice	plasma membrane	47.79	95.08
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	16.93	92.2
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	91.67	91.67
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	91.67	91.67
TraesCS2B01G404600.1	Wheat	plastid	91.54	91.54
HORVU2Hr1G092180.1	Barley	plastid	88.8	89.38
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	23.7	86.26
GSMUA_Achr5P13570_001	Banana	mitochondrion	77.21	81.91
VIT_00s0323g00080.t01	Wine grape	plastid	81.51	80.77
KRH57341	Soybean	nucleus, plastid	81.9	80.64
CDY46917	Canola	plastid	81.25	80.52
Bra027021.1-P	Field mustard	plastid	81.12	80.39
CDY31838	Canola	plastid	80.99	80.26
PGSC0003DMT400012076	Potato	cytosol, plastid	81.64	79.67
Solyc08g079180.2.1	Tomato	plastid	81.51	79.54
KRH04069	Soybean	nucleus, plastid	81.38	79.42
AT1G62750.1	Thale cress	plastid	80.73	79.18
Zm00001d034826_P001	Maize	mitochondrion, plastid	41.28	42.1
Zm00001d012770_P001	Maize	plastid	23.05	21.0
Zm00001d034776_P001	Maize	cytosol	23.05	21.0
Zm00001d034773_P001	Maize	cytosol	23.05	21.0
Zm00001d034771_P002	Maize	cytosol	23.05	21.0
Zm00001d020342_P001	Maize	mitochondrion	9.64	18.55
Zm00001d053861_P005	Maize	plastid	15.89	18.15
Zm00001d000213_P001	Maize	mitochondrion	15.62	17.65
Zm00001d015929_P002	Maize	plastid	15.36	17.59
Zm00001d043494_P005	Maize	mitochondrion	16.28	16.85
Zm00001d046549_P002	Maize	cytosol	21.22	16.65
Zm00001d033505_P001	Maize	cytosol	20.18	14.85

Protein Annotations

EntrezGene:103641883	MapMan:17.7.4.3	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870
Gene3D:3.40.50.300	ProteinID:AQK45088.1	InterPro:EFG_III	InterPro:EFG_III/V	InterPro:EFG_V	InterPro:EFG_V-like
InterPro:EFTu-like_2	InterPro:EF_G_plantC	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721	UniProt:K7UKK5
HAMAP:MF_00054_B	HAMAP:MF_03063	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43261
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540
SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00484
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI00022113EE	EnsemblPlantsGene:Zm00001d025948	EnsemblPlants:Zm00001d025948_P001
EnsemblPlants:Zm00001d025948_T001	SEG:seg	:	:	:	:

Description

Putative translation elongation factor family protein

Coordinates

chr10:-:134519364..134523011

Molecular Weight (calculated)

84305.4 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.189

Length

768 amino acids

Sequence
(BLAST)

001: MAAEAPVRAP AAARSARRPA AVVSASRLLL GYGPFLAPRF AAERAAVAGP AAGLCARPRK PRLSVVAMAG TDRQVPLHDY RNIGIMAHID AGKTTTTERV
101: LYYTGRNYKI GEVHEGTATM DWMEQEQERG ITITSAATTA FWNKHRINII DTPGHVDFTL EVERALRVLD GAICLFDSVA GVEPQSETVW RQADKYGVPR
201: ICFVNKMDRL GANFFRTRDM IVANLGAKPL VIQLPIGSED NFQGVVDLVR MKAIVWTGEE LGAKFEYRDI PADLQEMAQD YHVQMLETII ELDDDVMEKY
301: LEGTEPDEET VKKLIRKGTI SASFVPVLCG SAFKNKGVQP LLDAVVDYLP SPLDLPPMKG TDPEDPEILL ERQPSDDEPF SGLAFKIMTD PFVGSLTFVR
401: IYSGKLIAGS YVLNANKDKK ERIGRLLEMH ANSKEDIPVA VTGDIVALAG LKDTITGETL CDPDKPVVLE RMEFPDPVIK VAIEPKTKAD ADKMATGLIK
501: LAQEDPSFHF SRDEETNQTV IEGMGELHLD IIVDRLKREF KVEANVGAPQ VNYRESISKV AEIQYVHKKQ SGGSGQFADI LVRFEPLEAG SGYEFKSEIK
601: GGAVPKEYVP GVMKGLEESL PNGVLAGYPV VDFRAVLVDG SYHDVDSSVL AFQIAARGAF REGMRKAGPR LLEPIMRVEV ITPEEHLGDV IGDLNSRRGQ
701: VNSFGDKPGG LKVVDAFVPL AEMFQYVSTL RGMTKGRASY TMQLAKFDVV PQHIQNQLST AKAEEAAA

Best Arabidopsis Sequence Match ( AT1G62750.1 )
(BLAST)

001: MAADALRISS SSSGSLVCNL NGSQRRPVLL PLSHRATFLG LPPRASSSSI SSSIPQFLGT SRIGLGSSKL SQKKKQFSVF AAAEAEAKRA VPLKDYRNIG
101: IMAHIDAGKT TTTERILYYT GRNYKIGEVH EGTATMDWME QEQERGITIT SAATTTFWDK HRINIIDTPG HVDFTLEVER ALRVLDGAIC LFDSVAGVEP
201: QSETVWRQAD KYGVPRICFV NKMDRLGANF FRTRDMIVTN LGAKPLVLQI PIGAEDVFKG VVDLVRMKAI VWSGEELGAK FSYEDIPEDL EDLAQEYRAA
301: MMELIVDLDD EVMENYLEGV EPDEATVKRL VRKGTITGKF VPILCGSAFK NKGVQPLLDA VVDYLPSPVE VPPMNGTDPE NPEITIIRKP DDDEPFAGLA
401: FKIMSDPFVG SLTFVRVYSG KISAGSYVLN ANKGKKERIG RLLEMHANSR EDVKVALTGD IIALAGLKDT ITGETLSDPE NPVVLERMDF PDPVIKVAIE
501: PKTKADIDKM ATGLIKLAQE DPSFHFSRDE EMNQTVIEGM GELHLEIIVD RLKREFKVEA NVGAPQVNYR ESISKIAEVK YTHKKQSGGQ GQFADITVRF
601: EPLEAGSGYE FKSEIKGGAV PREYIPGVMK GLEECMSTGV LAGFPVVDVR ACLVDGSYHD VDSSVLAFQL AARGAFREGM RKAGPRMLEP IMRVEVVTPE
701: EHLGDVIGDL NSRRGQINSF GDKPGGLKVV DSLVPLAEMF QYVSTLRGMT KGRASYTMQL AKFDVVPQHI QNQLSSKDQE VAA

Arabidopsis Description

CPEFGElongation factor G, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SI75]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.