Factsheet for Zm00001d020342_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70516	Canola	cytosol	70.18	55.01
Bra010781.1-P	Field mustard	cytosol	70.93	51.27
CDY54261	Canola	nucleus	27.82	48.26
CDY32072	Canola	cytosol	69.67	42.97
CDY05533	Canola	cytosol	69.67	42.57
CDY70526	Canola	nucleus	9.02	42.35
CDY49974	Canola	nucleus	9.02	42.35
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	40.6	36.99
Zm00001d034771_P002	Maize	cytosol	76.69	36.3
Zm00001d012770_P001	Maize	plastid	76.44	36.18
KXG37185	Sorghum	cytosol	76.44	36.18
Zm00001d034773_P001	Maize	cytosol	76.44	36.18
Zm00001d034776_P001	Maize	cytosol	76.44	36.18
KXG37183	Sorghum	cytosol	76.44	36.18
CDX90241	Canola	cytosol, extracellular	70.18	35.4
Os01t0742200-01	Rice	cytosol, nucleus	72.93	35.23
AT3G12915.2	Thale cress	cytosol	68.17	34.52
KRH43759	Soybean	nucleus	72.18	34.16
KRH13696	Soybean	nucleus	71.93	34.05
VIT_19s0027g00760.t01	Wine grape	cytosol	72.68	34.0
Bra010782.1-P	Field mustard	cytosol	71.68	33.93
AT1G56070.2	Thale cress	cytosol	71.18	33.69
GSMUA_Achr4P01020_001	Banana	cytosol	73.18	33.6
CDY24982	Canola	endoplasmic reticulum, vacuole	70.18	33.41
Solyc08g062920.2.1	Tomato	nucleus, plastid	68.42	32.97
GSMUA_Achr10P...	Banana	cytosol	63.16	32.68
Bra017279.1-P	Field mustard	cytosol	71.43	32.46
CDY40423	Canola	cytosol	63.16	32.02
Bra020542.1-P	Field mustard	cytosol	71.68	30.26
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	54.64	28.31
KRH13693	Soybean	mitochondrion	56.39	27.21
KRH13692	Soybean	cytosol, mitochondrion	48.12	26.85
Zm00001d046549_P002	Maize	cytosol	36.59	14.91
Zm00001d033505_P001	Maize	cytosol	29.32	11.21
Zm00001d025948_P001	Maize	plastid	18.55	9.64
Zm00001d002822_P001	Maize	plastid	18.55	9.62
Zm00001d034826_P001	Maize	mitochondrion, plastid	16.54	8.76
Zm00001d053861_P005	Maize	plastid	12.53	7.44
Zm00001d000213_P001	Maize	mitochondrion	11.53	6.76
Zm00001d043494_P005	Maize	mitochondrion	10.53	5.66
Zm00001d015929_P002	Maize	plastid	8.77	5.22
KRH43761	Soybean	cytosol, nucleus, plastid	2.51	5.0
OQU75622	Sorghum	cytosol	1.0	1.18
CDY49975	Canola	cytosol	1.0	1.0

Protein Annotations

Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	MapMan:35.1	UniProt:A0A1D6I3L1	InterPro:EFG_III/V
InterPro:EFG_V-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0005488	GO:GO:0005525	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014721	ProteinID:ONM54730.1
PFAM:PF00679	PFAM:PF03764	PFAM:PF14492	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Transl_elong_EFG/EF2_IV
UniParc:UPI00084565EC	EnsemblPlantsGene:Zm00001d020342	EnsemblPlants:Zm00001d020342_P001	EnsemblPlants:Zm00001d020342_T001	SEG:seg	:

Description

Elongation factor 2

Coordinates

chr7:+:107669735..107670934

Molecular Weight (calculated)

44270.5 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.273

Length

399 amino acids

Sequence
(BLAST)

001: MATPSLSHGG CRRHCPLLTQ PSALAARLAV RPSQVQRRHS PQAHRHGASD QIERLHGATA SRLHARAHLS YPVFHRPWYV PEDTTAQPYL LHAPHLLHPL
101: PISDLPKLVE GLKRLAKSDP MVLCTMEESG EHIIAGAGEL HLEICLKDLQ EDFMCGAEII VSPPVVSFRE TVLEKSCRTV MSKSPNKHNR LYMEARPLEK
201: GLAEAIDDGR IGPRDDPKVR SQILSQEFGW DKDLAKKIWC FGPETTGPNM VVDMCKGVQY LNEIKDSVVA GFQWASKEGA LAKENMRGIC FEVCDVVLHA
301: DAIHRGDGQV IPTARRVIYA SQLTAKPRLL EPVYLVEIQA PENALGGIYG VLNQKRGHVF EEMQRPGTPL YNIKAYLPVI ESFGFSSQLR AATSGQAFP

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.