CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49974	Canola	nucleus	16.5	98.82
CDY70526	Canola	nucleus	16.31	97.65
Bra010781.1-P	Field mustard	cytosol	99.8	92.03
TraesCS2A01G234500.1	Wheat	cytosol	21.22	86.4
TraesCS7A01G288600.1	Wheat	cytosol	20.63	86.07
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	21.02	85.6
HORVU5Hr1G116710.1	Barley	cytosol	91.36	79.22
CDY05533	Canola	cytosol	93.12	72.59
CDY32072	Canola	cytosol	91.94	72.33
CDY54261	Canola	nucleus	32.22	71.3
TraesCS4A01G363900.1	Wheat	plastid	90.77	70.32
Zm00001d020342_P001	Maize	mitochondrion	55.01	70.18
CDX90241	Canola	cytosol, extracellular	93.71	60.3
AT1G56070.2	Thale cress	cytosol	95.87	57.89
KRH13696	Soybean	nucleus	93.71	56.58
KRH43759	Soybean	nucleus	93.52	56.47
CDY24982	Canola	endoplasmic reticulum, vacuole	92.53	56.21
Solyc08g062920.2.1	Tomato	nucleus, plastid	90.57	55.68
AT3G12915.2	Thale cress	cytosol	86.05	55.58
VIT_19s0027g00760.t01	Wine grape	cytosol	92.93	55.45
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	91.75	55.4
EES01455	Sorghum	cytosol	91.75	55.4
GSMUA_Achr10P...	Banana	cytosol	83.89	55.38
KXG37185	Sorghum	cytosol	91.55	55.28
KXG37183	Sorghum	cytosol	91.55	55.28
Zm00001d012770_P001	Maize	plastid	91.55	55.28
CDY40423	Canola	cytosol	85.46	55.27
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	91.36	55.16
TraesCS5B01G509600.1	Wheat	cytosol, golgi	91.36	55.16
TraesCS5D01G509600.1	Wheat	cytosol	91.36	55.16
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	91.36	55.16
Zm00001d034773_P001	Maize	cytosol	91.36	55.16
Zm00001d034776_P001	Maize	cytosol	91.36	55.16
Zm00001d034771_P002	Maize	cytosol	91.16	55.04
TraesCS7D01G449300.1	Wheat	cytosol	90.96	54.92
TraesCS3D01G220900.1	Wheat	golgi	90.77	54.8
HORVU7Hr1G106150.1	Barley	cytosol	90.77	54.8
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	90.77	54.8
TraesCS5B01G509700.1	Wheat	cytosol, golgi	90.77	54.8
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	90.77	54.8
TraesCS7B01G362600.1	Wheat	cytosol	90.77	54.8
HORVU3Hr1G057880.1	Barley	cytosol	90.57	54.69
HORVU3Hr1G057890.1	Barley	cytosol	90.57	54.69
TraesCS3A01G232300.1	Wheat	cytosol, golgi	90.57	54.69
TraesCS3B01G261500.1	Wheat	cytosol	90.57	54.69
TraesCS5D01G509700.1	Wheat	cytosol	88.21	54.42
TraesCS1B01G033500.1	Wheat	cytosol	42.44	53.6
GSMUA_Achr4P01020_001	Banana	cytosol	91.36	53.51
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	79.57	52.6
Os01t0742200-01	Rice	cytosol, nucleus	84.87	52.3
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	44.01	51.14
KRH13692	Soybean	cytosol, mitochondrion	67.78	48.25
KRH13693	Soybean	mitochondrion	74.66	45.95
TraesCS1D01G026800.1	Wheat	cytosol	57.76	42.24
CDY70689	Canola	cytosol	42.83	40.3
CDY71233	Canola	mitochondrion, nucleus	43.03	39.25
TraesCS1D01G023700.1	Wheat	cytosol	58.74	35.55
TraesCS1A01G027600.1	Wheat	cytosol	56.97	34.32
TraesCSU01G002600.1	Wheat	cytosol	57.17	33.72
HORVU1Hr1G003960.9	Barley	cytosol	55.21	30.48
CDY15566	Canola	cytosol	43.03	26.29
CDY32225	Canola	nucleus	15.72	22.6
TraesCS5D01G509800.1	Wheat	cytosol	19.45	22.15
CDY09982	Canola	nucleus	42.83	22.04
CDY49975	Canola	cytosol	16.9	21.55
CDY10688	Canola	cytosol	31.24	18.23
CDY32224	Canola	cytosol	15.13	14.95
Os05t0467501-00	Rice	cytosol	12.18	13.6
CDY46917	Canola	plastid	20.43	13.42
CDY31838	Canola	plastid	20.43	13.42
CDY10337	Canola	cytosol	12.18	13.08
CDX74705	Canola	plastid	17.09	11.52
CDY18957	Canola	plastid	17.09	11.51
CDY23967	Canola	cytosol	2.55	11.21
CDX84803	Canola	mitochondrion	12.77	10.42
CDY19061	Canola	mitochondrion	13.16	10.01
CDY54484	Canola	mitochondrion	12.97	9.87
CDY44781	Canola	plastid	11.98	9.04
CDY40739	Canola	plastid	11.98	8.92
CDX78349	Canola	cytosol	3.93	8.66
CDX91105	Canola	plastid	11.2	8.46
CDY65992	Canola	plastid	11.2	8.46
CDX67441	Canola	plastid	11.39	8.45
CDY09816	Canola	plastid	11.2	8.44
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	11.39	8.43
CDX85635	Canola	plastid	11.2	8.05
KRH43761	Soybean	cytosol, nucleus, plastid	2.16	5.5
OQU75622	Sorghum	cytosol	2.16	3.24
CDY69302	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	GO:A0A078JYF2
UniProt:A0A078JYF2	EnsemblPlants:CDY70516	ProteinID:CDY70516	ProteinID:CDY70516.1	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00003944001
InterPro:IPR014721	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PANTHER:PTHR42908
PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI0004EEE0A4	:

Description

BnaAnng33970DBnaAnng33970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYF2]

Coordinates

chrLK042359:+:71..1862

Molecular Weight (calculated)

56630.6 Da

IEP (calculated)

6.673

GRAVY (calculated)

-0.258

Length

509 amino acids

Sequence
(BLAST)

001: MMIFHLPSPH TAQRYRVENL YEGPLDDQYA TAIRNCDPNG PLMLYVSKMI PASDKGRFFA FGRVFSGKVS TGMKVRIMGP NFVPGEKKDL YVKSVQRTVI
101: WMGKRQETVE DVPCGNTVAM VGLDQFITKN ATLTNEKEVD AHPIRAMKFS VSPVVRVAVQ CKVASDLPKL VEGLKRLAKS DPMVVCTMEE SGEHIVAGAG
201: ELHLEICLKD LQDDFMGGAE IVKSDPVVSF RETVLERSVR TVMSKSPNKH NRLYMEARPL EDGLAEAIDE GRIGPRDDPK IRSKILAEEF GWDKDLAKKI
301: WAFGPETTGP NMVVDMCKGV QYLNEIKDSV VAGFQWASKE GPLCDENMRG ICFEVCDVVL HSDAIHRGGG QVIPTARRVI YASQITAKPR LLEPVYMVEI
401: QAPEGALGGI YSVLNQKRGH VFEEMQRPGT PLYNIKAYLP VVESFGFSSQ LRAATSGQAF PQCVFDHWEM MSSDPLEAGS QASTLVTDIR KRKGMKEQMT
501: PLSDFEDKL

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.