CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021694.1-P	Field mustard	mitochondrion	96.71	99.23
CDY54484	Canola	mitochondrion	99.1	99.1
CDY23967	Canola	cytosol	16.59	95.69
CDX84803	Canola	mitochondrion	87.14	93.43
AT2G31060.3	Thale cress	mitochondrion	91.78	91.51
KRH55837	Soybean	plastid	82.96	82.84
KRH25682	Soybean	plastid	82.81	82.69
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	82.21	81.85
PGSC0003DMT400024321	Potato	mitochondrion	80.72	81.08
Solyc07g053470.2.1	Tomato	mitochondrion	80.42	80.78
GSMUA_Achr8P27160_001	Banana	mitochondrion	77.88	77.76
EES01486	Sorghum	mitochondrion	76.68	76.23
Os01t0752700-01	Rice	mitochondrion	76.38	75.93
TraesCS3D01G291300.1	Wheat	mitochondrion	75.49	75.04
TraesCS3B01G326200.1	Wheat	mitochondrion	75.49	75.04
TraesCS3A01G291600.1	Wheat	mitochondrion	75.19	74.74
HORVU3Hr1G072230.1	Barley	plastid	75.04	72.23
Zm00001d043494_P005	Maize	mitochondrion	76.23	68.73
CDY65992	Canola	plastid	39.01	38.72
CDY09816	Canola	plastid	38.86	38.52
CDX91105	Canola	plastid	38.56	38.28
CDX85635	Canola	plastid	38.86	36.72
CDY44781	Canola	plastid	23.92	23.7
CDY40739	Canola	plastid	24.07	23.54
CDX67441	Canola	plastid	23.17	22.59
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	23.02	22.38
CDY49975	Canola	cytosol	11.81	19.8
CDY10337	Canola	cytosol	13.3	18.78
CDX78349	Canola	cytosol	6.13	17.75
CDY18957	Canola	plastid	18.98	16.8
CDX74705	Canola	plastid	18.83	16.69
CDY46917	Canola	plastid	19.28	16.65
CDY31838	Canola	plastid	18.98	16.39
CDX90241	Canola	cytosol, extracellular	19.28	16.31
CDY69302	Canola	cytosol	7.77	16.3
CDY40423	Canola	cytosol	18.98	16.14
CDY24982	Canola	endoplasmic reticulum, vacuole	19.58	15.63
CDY32224	Canola	cytosol	11.51	14.95
CDY10688	Canola	cytosol	17.64	13.53
CDY70516	Canola	cytosol	10.01	13.16
CDY15566	Canola	cytosol	15.55	12.48
CDY09982	Canola	nucleus	18.09	12.23
CDY32072	Canola	cytosol	11.66	12.06
CDY05533	Canola	cytosol	11.66	11.94
CDY70689	Canola	cytosol	9.27	11.46
CDY71233	Canola	mitochondrion, nucleus	9.27	11.11
CDY54261	Canola	nucleus	2.84	8.26
CDY70526	Canola	nucleus	0.9	7.06
CDY49974	Canola	nucleus	0.9	7.06
CDY32225	Canola	nucleus	3.14	5.93

Protein Annotations

Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
GO:A0A078G1B1	UniProt:A0A078G1B1	InterPro:BipA_V	EnsemblPlants:CDY19061	ProteinID:CDY19061	ProteinID:CDY19061.1
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00006331001	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF8	SUPFAM:SSF50447	SUPFAM:SSF52540
SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf
InterPro:TypA_GTP-bd	UniParc:UPI0004EE8BFD	SEG:seg	:	:	:

Description

BnaA04g18010DBnaA04g18010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1B1]

Coordinates

chrLK032092:-:6172..10830

Molecular Weight (calculated)

72763.6 Da

IEP (calculated)

6.912

GRAVY (calculated)

-0.219

Length

669 amino acids

Sequence
(BLAST)

001: MAGPLLRSLW SNTTRRSFSS SQSPHLKSRF SLSSLRAFSA ATASTAAAGA PSSSLDPNRL RNVAVIAHVD HGKTTLMDRI LRQCGADIPH ERAMDSINLE
101: RERGITISSK VTSVFWKDNE LNMVDTPGHA DFGGEVERVV GMVEGAILVV DAGEGPLAQT KFVLAKALKY GLRPILLLNK VDRPSVSEER CDEVESLVFD
201: LFANLGATEE QLDFPVLYAS AKEGWASSTF TKEPPADAKN MSQLLDAVVK YVPPPKADLD EPFLMLVSMM EKDFYLGRIL TGRVSSGVVR VGDKISGLRQ
301: TETGSSEKIE EAKVVKLMKK KGTTIVSIDA AGAGDIICMA GLTAPSIGHT VASVEVTTAL PAVELDPPTI SMTFGVNDSP LAGRDGTQLT GGKIGDRLMA
401: EAETNLAINV IPGLSESFEV QGRGELQLGI LIENMRREGF ELSVSPPKVM YKTENKQKLE PIEEVIIEIN EEHVGSVMEA LSHRRAEVTD MGPVPGNDGR
501: TRLTLTCPSR GLVGYRCVFS SDTRGTGFMH RAFLRYEKYR GPLGNVRKGV LVSMGYGTIT SHSLMGLEAR GTLFVSPGLD SYDGMIIGEH SRDTDLDVNP
601: VKAKELTNIR SANKDENVKL SPPRLMTLEE AIGYVASDEL IEVTPKRIRL RKRCLDVTKR KSQSKRAKD

Best Arabidopsis Sequence Match ( AT2G31060.2 )
(BLAST)

001: MAGPLLRSLW SNTTRRSFSS HSSPSKFGYS LSSLRSFSAA TASTAAAGAP NSSLDPNRLR NVAVIAHVDH GKTTLMDRLL RQCGADIPHE RAMDSINLER
101: ERGITISSKV TSIFWKDNEL NMVDTPGHAD FGGEVERVVG MVEGAILVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DRPSVTEERC DEVESLVFDL
201: FANCGATEEQ LDFPVLYASA KEGWASSTYT KDPPVDAKNM ADLLDAVVRH VQPPKANLDE PFLMLVSMME KDFYLGRILT GRVTSGVVRV GDRVNGLRKT
301: DSGSEKIEEA KVVKLMKKKG TTIVSIDAAG AGDIICMAGL TAPSIGHTVA SAEVTTALPT VELDPPTISM TFGVNDSPLA GQDGTHLTGG RIGDRLMAEA
401: ETNLAINVIP GLSESYEVQG RGELQLGILI ENMRREGFEL SVSPPKVMYK TEKGQKLEPI EEVTIEINDE HVGLVMEALS HRRAEVIDMG PVPGNEGRTR
501: LSLTCPSRGL VGYRCVFSSD TRGTGFMHRA FLTYEKYRGP LGNVRKGVLV SMARGTITAH SLMSLEARGI LFVSPGLDSY DGMIIGEHSR ETDLDLNPVK
601: AKELTNIRSA GKDENVKLSP PRLMTLEEAI GYVASDELIE VTPKTIRLRK RCLDVNKRKS QSKRAKD

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4IPW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.