Factsheet for PGSC0003DMT400024321

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053470.2.1	Tomato	mitochondrion	98.65	98.65
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	82.58	81.85
KRH55837	Soybean	plastid	81.98	81.49
AT2G31060.3	Thale cress	mitochondrion	81.98	81.37
CDX84803	Canola	mitochondrion	76.13	81.25
Bra022824.1-P	Field mustard	mitochondrion	76.58	80.82
CDY19061	Canola	mitochondrion	81.08	80.72
CDY54484	Canola	mitochondrion	81.08	80.72
KRH25682	Soybean	plastid	81.08	80.6
Bra021694.1-P	Field mustard	mitochondrion	78.38	80.06
GSMUA_Achr8P27160_001	Banana	mitochondrion	77.78	77.31
EES01486	Sorghum	mitochondrion	75.83	75.04
Os01t0752700-01	Rice	mitochondrion	75.53	74.74
TraesCS3D01G291300.1	Wheat	mitochondrion	74.17	73.4
TraesCS3B01G326200.1	Wheat	mitochondrion	74.17	73.4
TraesCS3A01G291600.1	Wheat	mitochondrion	73.87	73.11
HORVU3Hr1G072230.1	Barley	plastid	73.72	70.65
Zm00001d043494_P005	Maize	mitochondrion	74.92	67.25
PGSC0003DMT400070154	Potato	plastid	24.47	23.9
PGSC0003DMT400034344	Potato	mitochondrion	22.67	22.91
PGSC0003DMT400012076	Potato	cytosol, plastid	18.92	16.01
PGSC0003DMT400066962	Potato	mitochondrion	18.02	15.79
PGSC0003DMT400078978	Potato	cytosol	18.62	12.56
PGSC0003DMT400007735	Potato	cytosol	18.32	11.93

Protein Annotations

EntrezGene:102591349	Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
MapMan:35.1	InterPro:BipA_V	InterPro:EFG_III/V	InterPro:EFG_V-like	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	UniProt:M1AJW7	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	EnsemblPlantsGene:PGSC0003DMG400009402
PGSC:PGSC0003DMG400009402	EnsemblPlants:PGSC0003DMT400024321	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF8	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd	UniParc:UPI0002961A45	RefSeq:XP_006348840.1
SEG:seg	:	:	:	:	:

Description

GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009402]

Coordinates

chr7:-:49844161..49864396

Molecular Weight (calculated)

72016.1 Da

IEP (calculated)

7.035

GRAVY (calculated)

-0.169

Length

666 amino acids

Sequence
(BLAST)

001: MVGPLIRSLW STTRRSFSSS HYSHIKPLSY ARAFSTATAT APVGSAATAP GGALDPDRLR NVAVIAHVDH GKTTLMDRLL RQCGADIPHE RALDSIDLER
101: ERGITIASKV TSISWKDKEL NMVDTPGHAD FGGEVERVVG MVEGAVLVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DKPAVTEERC NEVESLVFDL
201: FANLGASEEQ LDFPVLYASA KEGWASSTYT KSPPDVKDMS QLLNAIVGHV PPPSASLDAP FQMLVSMMEK DPYLGRVLTG RVTCGVVRVG DKVQGLKNTD
301: NGTVKIEEGK VVKLMKKKGM RADPVDSAGA GDIVSMAGLS SPTIGHTVAN AEVTTALPTV VLDPPTISMT FGVNDSPLAG SDGIHLTGGK IGDRLLAESE
401: TNLAINVLPS TTESFEVQGR GELQLGILIE NMRREGFELS VSPPKVMYKV EKGTKLEPIE EVTIEVDDEH VGLVMEALSH RRGEVTDMGP VPGSMGRTRM
501: CLTCPSRGLV GYRSVFSSDT RGSGFMHRAF LTYEKYRGPL GNVRKGVLVS MGRGLITAHA LMGLEARGVL FVAPAMETYD GMIIGEHSRD TDLDVNPVKS
601: KELNNIRCAS KDENVKLTPP RLMSLEEAIG YVASDELIEV TPKAIRLRKR YLEVNKRKSM SKRPKD

Best Arabidopsis Sequence Match ( AT2G31060.2 )
(BLAST)

001: MAGPLLRSLW SNTTRRSFSS HSSPSKFGYS LSSLRSFSAA TASTAAAGAP NSSLDPNRLR NVAVIAHVDH GKTTLMDRLL RQCGADIPHE RAMDSINLER
101: ERGITISSKV TSIFWKDNEL NMVDTPGHAD FGGEVERVVG MVEGAILVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DRPSVTEERC DEVESLVFDL
201: FANCGATEEQ LDFPVLYASA KEGWASSTYT KDPPVDAKNM ADLLDAVVRH VQPPKANLDE PFLMLVSMME KDFYLGRILT GRVTSGVVRV GDRVNGLRKT
301: DSGSEKIEEA KVVKLMKKKG TTIVSIDAAG AGDIICMAGL TAPSIGHTVA SAEVTTALPT VELDPPTISM TFGVNDSPLA GQDGTHLTGG RIGDRLMAEA
401: ETNLAINVIP GLSESYEVQG RGELQLGILI ENMRREGFEL SVSPPKVMYK TEKGQKLEPI EEVTIEINDE HVGLVMEALS HRRAEVIDMG PVPGNEGRTR
501: LSLTCPSRGL VGYRCVFSSD TRGTGFMHRA FLTYEKYRGP LGNVRKGVLV SMARGTITAH SLMSLEARGI LFVSPGLDSY DGMIIGEHSR ETDLDLNPVK
601: AKELTNIRSA GKDENVKLSP PRLMTLEEAI GYVASDELIE VTPKTIRLRK RCLDVNKRKS QSKRAKD

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4IPW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.