Factsheet for VIT_12s0028g02640.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55837	Soybean	plastid	84.67	84.93
KRH25682	Soybean	plastid	84.52	84.78
AT2G31060.3	Thale cress	mitochondrion	83.33	83.46
Solyc07g053470.2.1	Tomato	mitochondrion	82.44	83.18
CDX84803	Canola	mitochondrion	76.79	82.69
PGSC0003DMT400024321	Potato	mitochondrion	81.85	82.58
Bra022824.1-P	Field mustard	mitochondrion	77.38	82.41
CDY19061	Canola	mitochondrion	81.85	82.21
CDY54484	Canola	mitochondrion	81.7	82.06
Bra021694.1-P	Field mustard	mitochondrion	78.87	81.29
GSMUA_Achr8P27160_001	Banana	mitochondrion	80.8	81.04
EES01486	Sorghum	mitochondrion	79.32	79.2
Os01t0752700-01	Rice	mitochondrion	79.02	78.9
TraesCS3B01G326200.1	Wheat	mitochondrion	78.57	78.45
TraesCS3D01G291300.1	Wheat	mitochondrion	78.57	78.45
TraesCS3A01G291600.1	Wheat	mitochondrion	78.27	78.16
HORVU3Hr1G072230.1	Barley	plastid	78.12	75.54
Zm00001d043494_P005	Maize	mitochondrion	79.46	71.97
VIT_08s0007g08290.t01	Wine grape	plastid	38.24	38.07
VIT_07s0031g03050.t01	Wine grape	plastid	24.26	23.97
VIT_14s0108g00130.t01	Wine grape	mitochondrion, plastid	23.36	23.05
VIT_15s0021g02450.t01	Wine grape	mitochondrion, plastid	19.2	17.29
VIT_00s0323g00080.t01	Wine grape	plastid	19.2	16.65
VIT_19s0027g00760.t01	Wine grape	cytosol	20.09	15.83
VIT_11s0118g00720.t01	Wine grape	nucleus	18.45	12.55
VIT_04s0044g01790.t01	Wine grape	cytosol	19.05	12.43
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	2.53	8.06

Protein Annotations

EntrezGene:100247278	wikigene:100247278	Gene3D:2.40.30.10	Gene3D:2.40.50.250	Gene3D:3.30.70.240	Gene3D:3.30.70.870
Gene3D:3.40.50.300	MapMan:35.1	InterPro:BipA_V	ProteinID:CBI21937	ProteinID:CBI21937.3	UniProt:E0CTM1
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	EMBL:FN595235	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	EntrezGene:LOC100247278	wikigene:LOC100247278	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF8
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	TIGR:TC63782	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01394	InterPro:Transl_B-barrel_sf	InterPro:TypA_GTP-bd	UniParc:UPI00019843F9	ArrayExpress:VIT_12s0028g02640
EnsemblPlantsGene:VIT_12s0028g02640	EnsemblPlants:VIT_12s0028g02640.t01	unigene:Vvi.15290	RefSeq:XP_002278771	RefSeq:XP_002278771.1	RefSeq:XP_003633251
RefSeq:XP_003633251.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:3418260..3441785

Molecular Weight (calculated)

72940.3 Da

IEP (calculated)

7.041

GRAVY (calculated)

-0.145

Length

672 amino acids

Sequence
(BLAST)

001: MAGPLLRSLW STTRKSLSSS SPSAPLRPFL CPRPHAYTLP RCFSAVAGAA AAAAPGSSLD PNRLRNVAVI AHVDHGKTTL MDRLLRQCGA DIPHERALDS
101: ISLERERGIT IASKVTAILW KENELNMVDT PGHADFGGEV ERVVGMVEGA VLVVDAGEGP LAQTKFVLAK ALKYGLRPIL LLNKVDRPAV TEERCDEVES
201: LVFDLFANLG ATEEQLDFPV LYASAKEGWA SSTFTKSPPD NTKSMSELLD AIIRHVPPPT ASLDAPFQML VSMMEKDFYL GRILTGRVSS GVIRVGDRVH
301: GLRSTDSGVE KIEEGKVLKL MKKKGTNMVL IDSAGAGDII SMAGLTSPSI GHTVANVEVM TALPTVELDP PTISMTFSVN DSPLAGRDGT HLTGGKIGDR
401: LMAEAETNLA INVLPGLSES YEVQGRGELQ LGILIENMRR EGFELSVSPP KVMYKTEKGV KFEPLEEVTI EVNEEHVGLV MEALSHRRAE VVDMGPVAGS
501: EGRTRISMTC PSRGLVGYRS VFSSDTRGTG FMHRAFLTYA KFRGPLGNVR KGVLVSMGHG TITAYALVSL EPRGTLFVTP GMETYDGMIV GEHSRDTDLD
601: INPVRAKELT NIRAASKDEN VKLTPPRLMT LEEAIGYVAS DELIEVTPKA IRLRKKYLDA NKRKMMRNKP KD

Best Arabidopsis Sequence Match ( AT2G31060.2 )
(BLAST)

001: MAGPLLRSLW SNTTRRSFSS HSSPSKFGYS LSSLRSFSAA TASTAAAGAP NSSLDPNRLR NVAVIAHVDH GKTTLMDRLL RQCGADIPHE RAMDSINLER
101: ERGITISSKV TSIFWKDNEL NMVDTPGHAD FGGEVERVVG MVEGAILVVD AGEGPLAQTK FVLAKALKYG LRPILLLNKV DRPSVTEERC DEVESLVFDL
201: FANCGATEEQ LDFPVLYASA KEGWASSTYT KDPPVDAKNM ADLLDAVVRH VQPPKANLDE PFLMLVSMME KDFYLGRILT GRVTSGVVRV GDRVNGLRKT
301: DSGSEKIEEA KVVKLMKKKG TTIVSIDAAG AGDIICMAGL TAPSIGHTVA SAEVTTALPT VELDPPTISM TFGVNDSPLA GQDGTHLTGG RIGDRLMAEA
401: ETNLAINVIP GLSESYEVQG RGELQLGILI ENMRREGFEL SVSPPKVMYK TEKGQKLEPI EEVTIEINDE HVGLVMEALS HRRAEVIDMG PVPGNEGRTR
501: LSLTCPSRGL VGYRCVFSSD TRGTGFMHRA FLTYEKYRGP LGNVRKGVLV SMARGTITAH SLMSLEARGI LFVSPGLDSY DGMIIGEHSR ETDLDLNPVK
601: AKELTNIRSA GKDENVKLSP PRLMTLEEAI GYVASDELIE VTPKTIRLRK RCLDVNKRKS QSKRAKD

Arabidopsis Description

Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4IPW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.