Factsheet for VIT_07s0031g03050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	73.68	88.83
HORVU6Hr1G025120.1	Barley	cytosol	13.68	86.11
PGSC0003DMT400070154	Potato	plastid	82.65	82.4
Solyc04g015450.2.1	Tomato	nucleus	82.5	82.38
OQU84405	Sorghum	plastid	80.88	81.72
KRH53996	Soybean	plasma membrane	82.5	81.66
CDY44781	Canola	plastid	80.88	81.48
Zm00001d053861_P005	Maize	plastid	80.0	80.95
AT5G08650.1	Thale cress	plastid	81.03	80.91
Bra028651.1-P	Field mustard	plastid	81.18	80.7
CDY40739	Canola	plastid	81.18	80.7
TraesCS6D01G120800.1	Wheat	plastid	78.82	80.0
TraesCS6B01G159200.1	Wheat	plastid	78.68	79.85
TraesCS6A01G130900.1	Wheat	plastid	78.53	79.7
HORVU6Hr1G025110.1	Barley	plastid	58.82	74.91
KRH63943	Soybean	plastid	81.91	74.27
VIT_14s0108g00130.t01	Wine grape	mitochondrion, plastid	46.91	46.84
VIT_12s0028g02640.t01	Wine grape	mitochondrion, plastid	23.97	24.26
VIT_08s0007g08290.t01	Wine grape	plastid	22.5	22.67
VIT_15s0021g02450.t01	Wine grape	mitochondrion, plastid	19.71	17.96
VIT_00s0323g00080.t01	Wine grape	plastid	17.65	15.48
VIT_19s0027g00760.t01	Wine grape	cytosol	18.24	14.54
VIT_04s0044g01790.t01	Wine grape	cytosol	18.97	12.52
VIT_11s0118g00720.t01	Wine grape	nucleus	16.18	11.13
VIT_00s1286g00020.t01	Wine grape	cytosol, mitochondrion	2.94	9.48

Protein Annotations

EntrezGene:100252626	wikigene:100252626	Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870
Gene3D:3.40.50.300	MapMan:35.1	EMBL:AM446164	ProteinID:CAN60938	ProteinID:CAN60938.1	ProteinID:CBI21650
ProteinID:CBI21650.3	UniProt:D7SWK1	InterPro:EF-4	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2
EMBL:FN595233	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019904	GO:GO:0045727	InterPro:GUFP
InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR038363	EntrezGene:LOC100252626	wikigene:LOC100252626	InterPro:LepA_CTD
InterPro:LepA_C_sf	InterPro:LepA_IV	HAMAP:MF_00071	HAMAP:MF_03138	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF00679	PFAM:PF03144	PFAM:PF06421	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR43512	PANTHER:PTHR43512:SF1	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01393	InterPro:Transl_B-barrel_sf	UniParc:UPI0001983AB9
ArrayExpress:VIT_07s0031g03050	EnsemblPlantsGene:VIT_07s0031g03050	EnsemblPlants:VIT_07s0031g03050.t01	unigene:Vvi.851	RefSeq:XP_002272359	RefSeq:XP_002272359.1
SEG:seg	:	:	:	:	:

Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:D7SWK1]

Coordinates

chr7:+:19786901..19813554

Molecular Weight (calculated)

75704.5 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.177

Length

680 amino acids

Sequence
(BLAST)

001: MAAKINSLAA LVSLQASHHH HNSTPFYFSP FSPHLSTTLT SRRRSLRSAV VAQSTAGTQS KAPSDVDLAA VSGQDRLLKV PISNIRNFCI IAHIDHGKST
101: LADKLLQMTG TVQKREMKEQ FLDNMDLERE RGITIKLQAA RMRYVFENEP YCLNLIDTPG HVDFSYEVSR SLAACEGALL VVDASQGVEA QTLANVYLAL
201: ENNLEIIPVL NKIDLPGAEP VRVSQEIEEV VGLDCSDAIH CSAKEGIGIT EILNAIVKRI PPPCDTAERP LRALIFDSYY DPYRGVIVYF RVIDGTIKKG
301: DRIYFMASKK DYFADEIGVL SPNQLQADEL YAGEVGYLAA SIRSVADARV GDTITHYGRK AENSLPGYEE ATPMVFCGLF PVDADKFPDL RDALEKLQLN
401: DAALKFEPET SSAMGFGFRC GFLGLLHMEI IQERLEREYN LTLITTAPSV VYRVNCINGD TVECSNPSLL PEPGKRTSIE EPYVKIEMLT PKDYIGPLME
501: LAQDRRGEFK EMKFITENRA SITYELPLAE MVGDFFDQLK SRSKGYASME YSFLGYKESE LIKLDIQING ERVEPLATIV HKDKAYAVGR ALTQKLKELI
601: PRQMFKVPIQ ACIGAKVIAS ESLSAIRKDV LSKCYGGDIT RKKKLLKKQA EGKKRMKAIG KVDVPQEAFM AVLKLEKEVL

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.