CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 9
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63332	Soybean	cytosol	36.24	91.88
KRH63943	Soybean	plastid	97.96	89.73
GSMUA_Achr3P07220_001	Banana	cytosol, nucleus, plastid	72.2	87.94
KRH63330	Soybean	cytosol, plasma membrane	34.35	87.73
VIT_07s0031g03050.t01	Wine grape	plastid	81.66	82.5
Solyc04g015450.2.1	Tomato	nucleus	81.22	81.94
PGSC0003DMT400070154	Potato	plastid	80.93	81.52
CDY44781	Canola	plastid	79.18	80.59
HORVU6Hr1G025120.1	Barley	cytosol	12.66	80.56
OQU84405	Sorghum	plastid	78.31	79.94
AT5G08650.1	Thale cress	plastid	79.18	79.88
Zm00001d053861_P005	Maize	plastid	77.58	79.32
Bra028651.1-P	Field mustard	plastid	78.89	79.24
CDY40739	Canola	plastid	78.89	79.24
TraesCS6D01G120800.1	Wheat	plastid	76.56	78.51
TraesCS6B01G159200.1	Wheat	plastid	76.42	78.36
TraesCS6A01G130900.1	Wheat	plastid	76.27	78.21
HORVU6Hr1G025110.1	Barley	plastid	57.79	74.34
KRH40434	Soybean	mitochondrion	47.02	47.85
KRH00796	Soybean	nucleus	30.86	32.27
KRH75280	Soybean	mitochondrion	5.24	27.27
KRH25682	Soybean	plastid	22.42	22.99
KRH55837	Soybean	plastid	22.27	22.84
KRH71976	Soybean	nucleus	22.13	22.49
KRH33159	Soybean	nucleus	22.13	22.35
KRH40894	Soybean	cytosol	9.9	19.65
KRG88956	Soybean	mitochondrion	18.34	18.08
KRH75282	Soybean	cytosol	4.8	16.92
KRH57341	Soybean	nucleus, plastid	17.76	15.64
KRH04069	Soybean	nucleus, plastid	17.76	15.5
KRH13696	Soybean	nucleus	18.2	14.83
KRH43759	Soybean	nucleus	18.2	14.83
KRH75283	Soybean	cytosol, mitochondrion	9.32	14.58
KRH13692	Soybean	cytosol, mitochondrion	15.14	14.55
KRH13693	Soybean	mitochondrion	17.32	14.39
KRG94823	Soybean	cytosol	19.07	12.82
KRH43761	Soybean	cytosol, nucleus, plastid	3.64	12.5
KRH03566	Soybean	nucleus	17.47	12.15
KRH20245	Soybean	nucleus	17.18	11.97

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.70.2570	Gene3D:3.30.70.3380	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
EMBL:ACUP02003491	InterPro:EF-4	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_06G159400
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0045727	InterPro:GUFP	InterPro:G_TR_CS	UniProt:I1KBR9	InterPro:IPR000795
InterPro:IPR038363	EnsemblPlants:KRH53996	ProteinID:KRH53996	ProteinID:KRH53996.1	InterPro:LepA_CTD	InterPro:LepA_C_sf
InterPro:LepA_IV	HAMAP:MF_00071	HAMAP:MF_03138	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF06421	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43512
PANTHER:PTHR43512:SF1	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	TIGRFAMs:TIGR01393	InterPro:Transl_B-barrel_sf	UniParc:UPI000233A46F	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:13135166..13144040

Molecular Weight (calculated)

76688.7 Da

IEP (calculated)

6.947

GRAVY (calculated)

-0.172

Length

687 amino acids

Sequence
(BLAST)

001: MAAEICGGSL FLSVKTQLQQ RNQQNVFFHA QRSRTRRSTT RFHSSKCCFS SSAFPNASPF RRGAVCRVAS TDFESSAKAG EDRLSKVPVR NIRNFCIIAH
101: IDHGKSTLAD KLLQVTGTVQ QREMKDQFLD NMDLERERGI TIKLQAARMR YVFENEPYCL NLIDTPGHVD FSYEVSRSLA ACEGALLVVD ASQGVEAQTL
201: ANVYLALENN LEIIPVLNKI DLPGAEPDRV IKEIEEIVGL DCSNAILCSA KEGIGIIEIL NAIVARIPPP EDTSKRPLRA LIFDSYYDPY RGVIVYFRVV
301: DGTIKKGDRV YFMASGKDYF ADEIGVLSPS QLQVEELYAG EVGYLSASIR TVADARVGDT ITHYGRKADN SLPGYEEATP MVFCGLFPVD ADQFPDLRDA
401: LEKLQLNDAA LKFEPETSSA MGFGFRCGFL GLLHMEIVQE RLEREYNLSL ITTAPSVVYR VHCVNGDTVE CSNPSLLPEP GKRKSIEEPF VKIEMLTPKD
501: YIGPLMELAQ ERRGQFKEMK FIAENRASIT YELPLAEMVG DFFDQLKSRS KGYASMEYTF VGYIESNLIK LDIRINGDCV EPLATIVHND KAYSVGRALT
601: LKLKELIPRQ MFKVPIQACI GSKVIASEAI SAIRKDVLAK CYGGDISRKK KLLKKQAEGK KRMKSIGKVD VPQEAFMAVL KLEKEVI

Best Arabidopsis Sequence Match ( AT5G08650.1 )
(BLAST)

001: MAMASAMDLS SPPTFFLSGT STSSPSLRRL SSISVSGFRR HSNRKLQILC QATAGTEPQS GLSVSGSKLA ARSGQDRLLK VPISNIRNFS IIAHIDHGKS
101: TLADKLLQVT GTVQNRDMKE QFLDNMDLER ERGITIKLQA ARMRYVYEDT PFCLNLIDTP GHVDFSYEVS RSLAACEGAL LVVDASQGVE AQTLANVYLA
201: LENNLEIIPV LNKIDLPGAE PEKVLREIEE VIGLDCSKAI FCSAKEGIGI TEILDAIVQR IPAPLDTAGK PLRALIFDSY YDPYRGVIVY FRVIDGKVKK
301: GDRIFFMASG KDYFADEVGV LSPNQIQVDE LYAGEVGYIA ASVRSVADAR VGDTITHYSR KAESSLPGYE EATPMVFCGL FPVDADQFPD LRDALEKLQL
401: NDAALKFEPE TSSAMGFGFR CGFLGLLHME IVQERLEREY NLNLITTAPS VVYRVNSVNG DTTLCSNPSR LPDPGQRKSV EEPYVKIELL TPKDYIGALM
501: ELAQERRGEF KEMKYIAENR ASILYELPLA EMVGDFFDQL KSRTKGYASM EYSVIGYRES DLIKLDILIN AEMVEPLSTI VHRDKAYSVG RALTQKLKEL
601: IPRQMFKVPI QACIGSKVIA SEALSAIRKD VLAKCYGGDI SRKKKLLKKQ AAGKKRMKAI GRVDVPQEAF MAVLKLEREV L

Arabidopsis Description

Translation factor GUF1 homolog, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178USI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.