CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13696	Soybean	nucleus	99.64	99.64
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	87.07	95.32
GSMUA_Achr10P...	Banana	cytosol	87.07	95.2
Solyc08g062920.2.1	Tomato	nucleus, plastid	93.48	95.17
CDY49975	Canola	cytosol	44.84	94.74
Bra010782.1-P	Field mustard	cytosol	94.07	94.07
CDX90241	Canola	cytosol, extracellular	88.14	93.93
VIT_19s0027g00760.t01	Wine grape	cytosol	95.02	93.9
KXG37183	Sorghum	cytosol	93.83	93.83
KXG37185	Sorghum	cytosol	93.83	93.83
EES01455	Sorghum	cytosol	93.59	93.59
CDY70516	Canola	cytosol	56.47	93.52
Bra010781.1-P	Field mustard	cytosol	61.21	93.48
Zm00001d012770_P001	Maize	plastid	93.36	93.36
CDY05533	Canola	cytosol	72.24	93.26
AT1G56070.2	Thale cress	cytosol	93.24	93.24
Zm00001d034773_P001	Maize	cytosol	93.24	93.24
Zm00001d034776_P001	Maize	cytosol	93.24	93.24
TraesCS5D01G509700.1	Wheat	cytosol	91.22	93.21
Zm00001d034771_P002	Maize	cytosol	93.12	93.12
TraesCS3A01G232300.1	Wheat	cytosol, golgi	93.12	93.12
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	93.12	93.12
CDY32072	Canola	cytosol	71.41	93.04
TraesCS3D01G220900.1	Wheat	golgi	93.0	93.0
TraesCS5B01G509600.1	Wheat	cytosol, golgi	93.0	93.0
TraesCS5D01G509600.1	Wheat	cytosol	92.88	92.88
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	92.88	92.88
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	92.88	92.88
TraesCS3B01G261500.1	Wheat	cytosol	92.76	92.76
TraesCS7D01G449300.1	Wheat	cytosol	92.65	92.65
OQU75622	Sorghum	cytosol	37.25	92.63
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	92.53	92.53
HORVU3Hr1G057880.1	Barley	cytosol	92.53	92.53
HORVU7Hr1G106150.1	Barley	cytosol	92.53	92.53
TraesCS7B01G362600.1	Wheat	cytosol	92.53	92.53
HORVU3Hr1G057890.1	Barley	cytosol	92.53	92.53
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	92.29	92.29
TraesCS5B01G509700.1	Wheat	cytosol, golgi	92.17	92.17
GSMUA_Achr4P01020_001	Banana	cytosol	94.42	91.6
TraesCS5D01G509800.1	Wheat	cytosol	48.04	90.6
CDY49974	Canola	nucleus	9.13	90.59
CDY24982	Canola	endoplasmic reticulum, vacuole	89.92	90.45
Bra017279.1-P	Field mustard	cytosol	93.48	89.75
CDY40423	Canola	cytosol	83.63	89.58
Os01t0742200-01	Rice	cytosol, nucleus	87.66	89.47
CDY70526	Canola	nucleus	9.02	89.41
AT3G12915.2	Thale cress	cytosol	83.51	89.34
TraesCS4A01G363900.1	Wheat	plastid	69.51	89.19
HORVU5Hr1G116710.1	Barley	cytosol	60.38	86.71
TraesCS2A01G234500.1	Wheat	cytosol	12.81	86.4
TraesCS7A01G288600.1	Wheat	cytosol	12.46	86.07
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	12.69	85.6
Bra020542.1-P	Field mustard	cytosol	93.59	83.49
KRH43761	Soybean	cytosol, nucleus, plastid	18.74	79.0
KRH13693	Soybean	mitochondrion	76.87	78.36
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	40.09	77.17
KRH13692	Soybean	cytosol, mitochondrion	62.63	73.85
Zm00001d020342_P001	Maize	mitochondrion	34.16	72.18
CDY54261	Canola	nucleus	17.68	64.78
TraesCS1D01G023700.1	Wheat	cytosol	61.8	61.95
TraesCS1A01G027600.1	Wheat	cytosol	60.62	60.47
TraesCS1D01G026800.1	Wheat	cytosol	49.11	59.48
TraesCSU01G002600.1	Wheat	cytosol	60.02	58.63
TraesCS1B01G033500.1	Wheat	cytosol	26.22	54.84
HORVU1Hr1G003960.9	Barley	cytosol	58.72	53.69
Os05t0467501-00	Rice	cytosol	27.28	50.44
KRH40894	Soybean	cytosol	14.83	36.13
KRH20245	Soybean	nucleus	38.91	33.27
KRH03566	Soybean	nucleus	38.91	33.2
KRG94823	Soybean	cytosol	35.35	29.16
KRH75282	Soybean	cytosol	6.05	26.15
KRH57341	Soybean	nucleus, plastid	21.0	22.69
KRG88956	Soybean	mitochondrion	18.62	22.53
KRH04069	Soybean	nucleus, plastid	21.0	22.49
KRH75283	Soybean	cytosol, mitochondrion	11.51	22.1
KRH55837	Soybean	plastid	15.54	19.55
KRH25682	Soybean	plastid	15.3	19.25
KRH53996	Soybean	plasma membrane	14.83	18.2
KRH75280	Soybean	mitochondrion	2.85	18.18
KRH33159	Soybean	nucleus	14.59	18.09
KRH40434	Soybean	mitochondrion	14.47	18.07
KRH71976	Soybean	nucleus	14.47	18.05
KRH63943	Soybean	plastid	14.83	16.67
KRH63330	Soybean	cytosol, plasma membrane	4.74	14.87
KRH63332	Soybean	cytosol	4.27	13.28
KRH00796	Soybean	nucleus	9.61	12.33

Protein Annotations

EntrezGene:100804251	MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870
Gene3D:3.40.50.300	Gene3D:3.90.1430.10	EMBL:ACUP02004893	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2
EnsemblPlantsGene:GLYMA_08G170000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	UniProt:I1KU21	InterPro:IPR000795	InterPro:IPR014721
EnsemblPlants:KRH43759	ProteinID:KRH43759	ProteinID:KRH43759.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679
PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889
SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI00023383F4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:13532265..13536550

Molecular Weight (calculated)

94048.6 Da

IEP (calculated)

5.974

GRAVY (calculated)

-0.225

Length

843 amino acids

Sequence
(BLAST)

001: MVKFTAEELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDEALKSFK GERNGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CVEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFQR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDEGKM MERLWGENFF DPATKKWTSK NSGSATCKRG FVQFCYEPIK QIINTCMNDQ KDKLWPMLQK
301: LGVTMKSEEK DLMGKALMKR VMQTWLPASS ALLEMMIFHL PSPSTAQKYR VENLYEGPLD DQYASAIRNC DPEGPLMLYV SKMIPASDKG RFFAFGRVFS
401: GRVSTGLKVR IMGPNYVPGE KKDLYVKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TIEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVLE RSCRTVMSKS PNKHNRLYME ARPLEEGLAE
601: AIDDGKIGPR DDPKVRSKIL SEEFGWDKDL AKKIWCFGPE TLGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRAICFEVC DVVLHADAIH
701: RGGGQIIPTA RRVFYASQIT AKPRLLEPVY LVEIQAPEQA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVIESFG FSSTLRAATS GQAFPQCVFD
801: HWDMMSSDPL EAGSQAAQLV TDIRKRKGLK EQMTPLSEFE DKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.