CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49975	Canola	cytosol	50.44	100.0
CDY05533	Canola	cytosol	82.05	99.39
CDY32072	Canola	cytosol	80.91	98.92
CDY49974	Canola	nucleus	10.62	98.82
CDY70526	Canola	nucleus	10.49	97.65
CDY70516	Canola	cytosol	60.3	93.71
Bra010782.1-P	Field mustard	cytosol	99.87	93.71
CDY24982	Canola	endoplasmic reticulum, vacuole	98.86	93.32
CDY40423	Canola	cytosol	90.77	91.23
AT1G56070.2	Thale cress	cytosol	96.21	90.27
KRH13696	Soybean	nucleus	94.31	88.49
Solyc08g062920.2.1	Tomato	nucleus, plastid	92.29	88.16
KRH43759	Soybean	nucleus	93.93	88.14
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	85.21	87.53
OQU75622	Sorghum	cytosol	37.29	87.02
KXG37185	Sorghum	cytosol	92.41	86.71
KXG37183	Sorghum	cytosol	92.41	86.71
EES01455	Sorghum	cytosol	92.41	86.71
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	92.29	86.6
Zm00001d012770_P001	Maize	plastid	92.29	86.6
Zm00001d034773_P001	Maize	cytosol	92.29	86.6
Zm00001d034776_P001	Maize	cytosol	92.29	86.6
AT3G12915.2	Thale cress	cytosol	86.22	86.55
GSMUA_Achr10P...	Banana	cytosol	84.32	86.51
VIT_19s0027g00760.t01	Wine grape	cytosol	93.17	86.4
TraesCS2A01G234500.1	Wheat	cytosol	13.65	86.4
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	92.04	86.36
TraesCS3A01G232300.1	Wheat	cytosol, golgi	92.04	86.36
TraesCS5D01G509600.1	Wheat	cytosol	92.04	86.36
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	92.04	86.36
Zm00001d034771_P002	Maize	cytosol	92.04	86.36
TraesCS5B01G509600.1	Wheat	cytosol, golgi	92.04	86.36
TraesCS5D01G509700.1	Wheat	cytosol	90.01	86.3
TraesCS3D01G220900.1	Wheat	golgi	91.91	86.24
TraesCS7D01G449300.1	Wheat	cytosol	91.78	86.12
TraesCS3B01G261500.1	Wheat	cytosol	91.78	86.12
TraesCS7A01G288600.1	Wheat	cytosol	13.27	86.07
TraesCS7B01G362600.1	Wheat	cytosol	91.66	86.0
HORVU7Hr1G106150.1	Barley	cytosol	91.66	86.0
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	91.66	86.0
HORVU3Hr1G057880.1	Barley	cytosol	91.53	85.88
HORVU3Hr1G057890.1	Barley	cytosol	91.53	85.88
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	91.53	85.88
TraesCS5B01G509700.1	Wheat	cytosol, golgi	91.53	85.88
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	13.53	85.6
GSMUA_Achr4P01020_001	Banana	cytosol	92.29	84.0
TraesCS4A01G363900.1	Wheat	plastid	69.28	83.41
Os01t0742200-01	Rice	cytosol, nucleus	86.47	82.81
TraesCS5D01G509800.1	Wheat	cytosol	45.39	80.31
HORVU5Hr1G116710.1	Barley	cytosol	59.17	79.73
KRH43761	Soybean	cytosol, nucleus, plastid	19.85	78.5
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	41.72	75.34
CDY54261	Canola	nucleus	20.86	71.74
KRH13693	Soybean	mitochondrion	74.59	71.34
Zm00001d020342_P001	Maize	mitochondrion	35.4	70.18
KRH13692	Soybean	cytosol, mitochondrion	60.43	66.85
TraesCS1D01G023700.1	Wheat	cytosol	60.3	56.72
TraesCS1D01G026800.1	Wheat	cytosol	48.42	55.03
TraesCS1A01G027600.1	Wheat	cytosol	58.41	54.67
TraesCS1B01G033500.1	Wheat	cytosol	27.43	53.85
TraesCSU01G002600.1	Wheat	cytosol	58.03	53.19
HORVU1Hr1G003960.9	Barley	cytosol	56.26	48.26
Os05t0467501-00	Rice	cytosol	26.8	46.49
CDY10337	Canola	cytosol	22.76	37.97
CDY70689	Canola	cytosol	25.79	37.71
CDY71233	Canola	mitochondrion, nucleus	26.04	36.92
CDY15566	Canola	cytosol	38.56	36.61
CDY32224	Canola	cytosol	20.99	32.23
CDY09982	Canola	nucleus	39.32	31.45
CDY10688	Canola	cytosol	33.88	30.73
CDY32225	Canola	nucleus	10.24	22.88
CDY46917	Canola	plastid	21.62	22.06
CDY31838	Canola	plastid	21.62	22.06
CDY69302	Canola	cytosol	8.47	21.0
CDX84803	Canola	mitochondrion	16.18	20.51
CDX74705	Canola	plastid	19.34	20.26
CDY18957	Canola	plastid	19.34	20.24
CDY54484	Canola	mitochondrion	16.31	19.28
CDY19061	Canola	mitochondrion	16.31	19.28
CDY44781	Canola	plastid	15.04	17.63
CDY40739	Canola	plastid	15.04	17.4
CDX91105	Canola	plastid	14.79	17.36
CDY65992	Canola	plastid	14.79	17.36
CDY09816	Canola	plastid	14.79	17.33
CDX67441	Canola	plastid	14.79	17.06
CDY65319	Canola	endoplasmic reticulum, plastid, vacuole	14.79	17.01
CDX85635	Canola	plastid	14.79	16.53
CDX78349	Canola	cytosol	4.17	14.29
CDY23967	Canola	cytosol	1.77	12.07

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	MapMan:35.1
GO:A0A078DLU0	EnsemblPlants:CDX90241	ProteinID:CDX90241	ProteinID:CDX90241.1	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00150805001	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV
UniParc:UPI0004EE925C	:	:	:	:	:

Description

BnaA08g17430D

Coordinates

chrLK031862:+:811293..814983

Molecular Weight (calculated)

88049.3 Da

IEP (calculated)

5.964

GRAVY (calculated)

-0.215

Length

791 amino acids

Sequence
(BLAST)

001: MSVIAHVDHG KSTLTDSLVA AAGIIAQEVA GDVRMTDTRA DEAERGITIK STGISLYYEM TDASLKSFTG ARDGNEYLIN LIDSPGHVDF SSEVTAALRI
101: TDGALVVVDC IEGVCVQTET VLRQALGERI RPVLTVNKMD RCFLELQVDG EEAYQTFQRV IENANVIMAT YEDPLLGDVQ VYPEKGTVAF SAGLHGWAFT
201: LTNFAKMYAS KFGVDETKMM ERLWGENFFD PATRKWSSKN TGSATCKRGF VQFCYEPIKQ IIATCMNDQK DKLWPMLQKL GVQMKSDEKE LMGKPLMKRV
301: MQTWLPASTA LLEMMIFHLP SPHTAQRYRV ENLYEDKGRF FAFGRVFSGK VSTGMKVRIM GPNFVPGEKK DLYVKSVQRT VIWMGKRQET VEDVPCGNTV
401: AMVGLDQFIT KNATLTNEKE VDAHPIRAMK FSVSPVVRVA VQCKVASDLP KLVEGLKRLA KSDPMVVCTM EESGEHIVAG AGELHLEICL KDLQDDFMGG
501: AEIVKSDPVV SFRETVLERS VRTVMSKSPN KHNRLYMEAR PLEDGLAEAI DEGRIGPRDD PKIRSKILAE EFGWDKDLAK KIWAFGPETT GPNMVVDMCK
601: GVQYLNEIKD SVVAGFQWAS KEGPLCDENM RGICFEVCDV VLHSDAIHRG GGQVIPTARR VIYASQLTAK PRLLEPVYMV EIQAPEGALG GIYSVLNQKR
701: GHVFEEMQRP GTPLYNIKAY LPVVESFGFS SQLRAATSGQ AFPQCVFDHW EMMSSDPLEA GSQASTLVTD IRKRKGMKEQ MTPLSDFEDK L

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.