Factsheet for TraesCS5D01G509700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	100.0	97.86
TraesCS5D01G509600.1	Wheat	cytosol	99.88	97.75
TraesCS5B01G509600.1	Wheat	cytosol, golgi	99.88	97.75
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	99.76	97.63
TraesCS7D01G449300.1	Wheat	cytosol	99.03	96.92
TraesCS5D01G509800.1	Wheat	cytosol	51.03	94.18
TraesCS3D01G220900.1	Wheat	golgi	94.67	92.65
GSMUA_Achr10P...	Banana	cytosol	85.58	91.57
KRH43759	Soybean	nucleus	93.21	91.22
KRH13696	Soybean	nucleus	93.09	91.1
Solyc08g062920.2.1	Tomato	nucleus, plastid	91.15	90.82
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	84.24	90.26
CDX90241	Canola	cytosol, extracellular	86.3	90.01
HORVU5Hr1G116710.1	Barley	cytosol	64.0	89.95
Bra010782.1-P	Field mustard	cytosol	91.88	89.92
VIT_19s0027g00760.t01	Wine grape	cytosol	92.61	89.57
AT1G56070.2	Thale cress	cytosol	91.39	89.44
CDY49974	Canola	nucleus	9.21	89.41
CDY05533	Canola	cytosol	70.55	89.13
CDY32072	Canola	cytosol	69.7	88.87
CDY70526	Canola	nucleus	9.09	88.24
CDY70516	Canola	cytosol	54.42	88.21
GSMUA_Achr4P01020_001	Banana	cytosol	92.85	88.15
Bra010781.1-P	Field mustard	cytosol	58.91	88.04
CDY49975	Canola	cytosol	42.55	87.97
AT3G12915.2	Thale cress	cytosol	82.3	86.17
CDY24982	Canola	endoplasmic reticulum, vacuole	87.52	86.16
Bra017279.1-P	Field mustard	cytosol	91.27	85.76
CDY40423	Canola	cytosol	81.45	85.39
Bra020542.1-P	Field mustard	cytosol	91.39	79.79
KRH43761	Soybean	cytosol, nucleus, plastid	19.03	78.5
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	40.85	76.94
KRH13693	Soybean	mitochondrion	74.42	74.24
KRH13692	Soybean	cytosol, mitochondrion	59.03	68.11
CDY54261	Canola	nucleus	18.3	65.65
TraesCS1D01G023700.1	Wheat	cytosol	62.42	61.24
TraesCS1D01G026800.1	Wheat	cytosol	49.21	58.33
TraesCS7D01G376800.1	Wheat	cytosol	37.7	31.29
TraesCS5D01G380500.1	Wheat	cytosol	34.55	27.27
TraesCS1D01G049600.1	Wheat	cytosol	31.15	26.83
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	21.7	23.31
TraesCS7D01G344300.4	Wheat	mitochondrion	19.39	20.51
TraesCS7D01G081700.2	Wheat	mitochondrion	15.64	19.37
TraesCS3D01G291300.1	Wheat	mitochondrion	15.64	19.17
TraesCS6D01G183500.1	Wheat	plastid	15.27	18.75
TraesCS6D01G120800.1	Wheat	plastid	14.91	18.36

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	InterPro:IPR000795
InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03764	PFAM:PF14492
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS5D01G509700	EnsemblPlants:TraesCS5D01G509700.1
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	TIGR:cd01885	TIGR:cd04096	TIGR:cd16261
TIGR:cd16268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:534856264..534859370

Molecular Weight (calculated)

91899.2 Da

IEP (calculated)

5.779

GRAVY (calculated)

-0.193

Length

825 amino acids

Sequence
(BLAST)

001: MVKFTAEELR GIMDKKNNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLFYQ MTPESLEMYK GDRDGDEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVE GEEAYQTFSR VIENANVIMA TYEDVLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDEAKM MERLWGENFF DPATKKWTSK NTGTATCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLKK
301: LGVTMKNDEK DLMGKALMKR VMQTWLPASR ALLEMMIFHL PSPSKAQRYR VENLYEGPLD DIYANAIRNC DPDGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GRKKDLYVKS VQRTVIWMGK KQESVEDVPC GNTVALVGLD QFITKNATLT NEKEVDACPI RAMKFSVSPV VRVAVQCKVA SDLPKLVEGL KRLAKSDPMV
501: LCSIEESGEH IIAGAGELHL EICLKDLQED FMGGAEIIVS PPVVSFRETV LEKSCRTVMS KSPNKHNRLY MEARPLEEGL AEAIDDGRIG PRDDPKVRSK
601: ILSEEFGWDK DLAKKIWCFG PETTGPNMVV DMCKGVQYLN EIKDSVVAGF QWASKEGALA EENMRGICFE VCDVVLHTDA IHRGGGQVIP TARRVIYASQ
701: LTAKPRLLEP VYLVEIQAPE NALGGIYGVL NQKRGHVFEE MQRPGTPLYN IKAYLPVIES FGFSSTLRAA TSGQAFPQCV FDHWDIMSSD PLEAGSQSAT
801: LVTEIRKRKG LKEQMTPLSD FEDKL

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.