CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G288600.1	Wheat	cytosol	12.45	72.95
TraesCS2A01G234500.1	Wheat	cytosol	12.73	72.8
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	12.59	72.0
CDY70516	Canola	cytosol	48.25	67.78
Bra010781.1-P	Field mustard	cytosol	51.89	67.21
GSMUA_Achr10P...	Banana	cytosol	68.67	63.68
KRH13696	Soybean	nucleus	73.85	62.63
KRH43759	Soybean	nucleus	73.85	62.63
HORVU5Hr1G116710.1	Barley	cytosol	50.35	61.33
Bra010782.1-P	Field mustard	cytosol	72.31	61.33
AT3G12915.2	Thale cress	cytosol	67.27	61.04
KXG37185	Sorghum	cytosol	71.89	60.97
KXG37183	Sorghum	cytosol	71.89	60.97
AT1G56070.2	Thale cress	cytosol	71.89	60.97
VIT_19s0027g00760.t01	Wine grape	cytosol	72.59	60.84
Zm00001d012770_P001	Maize	plastid	71.61	60.74
Zm00001d034771_P002	Maize	cytosol	71.61	60.74
EES01455	Sorghum	cytosol	71.61	60.74
Zm00001d034773_P001	Maize	cytosol	71.47	60.62
Zm00001d034776_P001	Maize	cytosol	71.47	60.62
KRH13693	Soybean	mitochondrion	70.07	60.58
Solyc08g062920.2.1	Tomato	nucleus, plastid	70.07	60.51
CDX90241	Canola	cytosol, extracellular	66.85	60.43
TraesCS3A01G232300.1	Wheat	cytosol, golgi	71.19	60.38
TraesCS3D01G220900.1	Wheat	golgi	70.91	60.14
Os01t0742200-01	Rice	cytosol, nucleus	69.37	60.05
TraesCS3B01G261500.1	Wheat	cytosol	70.77	60.02
HORVU3Hr1G057880.1	Barley	cytosol	70.63	59.91
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	70.63	59.91
HORVU3Hr1G057890.1	Barley	cytosol	70.63	59.91
TraesCS5B01G509700.1	Wheat	cytosol, golgi	70.49	59.79
HORVU7Hr1G106150.1	Barley	cytosol	70.35	59.67
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	70.35	59.67
TraesCS7D01G449300.1	Wheat	cytosol	70.35	59.67
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	70.35	59.67
TraesCS7B01G362600.1	Wheat	cytosol	70.21	59.55
TraesCS5B01G509600.1	Wheat	cytosol, golgi	70.21	59.55
GSMUA_Achr4P01020_001	Banana	cytosol	72.31	59.49
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	70.07	59.43
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	70.07	59.43
TraesCS5D01G509600.1	Wheat	cytosol	70.07	59.43
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	63.92	59.35
CDY40423	Canola	cytosol	65.03	59.09
TraesCS5D01G509700.1	Wheat	cytosol	68.11	59.03
Bra017279.1-P	Field mustard	cytosol	72.31	58.88
CDY70526	Canola	nucleus	6.99	58.82
TraesCS4A01G363900.1	Wheat	plastid	53.99	58.75
CDY49974	Canola	nucleus	6.85	57.65
CDY24982	Canola	endoplasmic reticulum, vacuole	67.13	57.28
CDY49975	Canola	cytosol	31.89	57.14
CDY05533	Canola	cytosol	51.47	56.36
TraesCS5D01G509800.1	Wheat	cytosol	34.97	55.93
CDY32072	Canola	cytosol	50.49	55.8
Bra020542.1-P	Field mustard	cytosol	72.45	54.81
OQU75622	Sorghum	cytosol	24.34	51.33
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	31.33	51.14
Zm00001d020342_P001	Maize	mitochondrion	26.85	48.12
TraesCS1D01G023700.1	Wheat	cytosol	52.59	44.71
TraesCS1A01G027600.1	Wheat	cytosol	50.35	42.6
KRH43761	Soybean	cytosol, nucleus, plastid	11.89	42.5
CDY54261	Canola	nucleus	13.15	40.87
TraesCSU01G002600.1	Wheat	cytosol	49.23	40.79
TraesCS1D01G026800.1	Wheat	cytosol	38.74	39.8
TraesCS1B01G033500.1	Wheat	cytosol	22.24	39.45
HORVU1Hr1G003960.9	Barley	cytosol	47.97	37.2
Os05t0467501-00	Rice	cytosol	21.4	33.55
KRH20245	Soybean	nucleus	35.66	25.86
KRH03566	Soybean	nucleus	35.66	25.81
KRH40894	Soybean	cytosol	11.89	24.57
KRG94823	Soybean	cytosol	32.59	22.8
KRH57341	Soybean	nucleus, plastid	21.12	19.36
KRH04069	Soybean	nucleus, plastid	20.98	19.06
KRH75283	Soybean	cytosol, mitochondrion	11.47	18.68
KRG88956	Soybean	mitochondrion	18.04	18.51
KRH75282	Soybean	cytosol	5.03	18.46
KRH55837	Soybean	plastid	16.36	17.46
KRH25682	Soybean	plastid	16.08	17.16
KRH33159	Soybean	nucleus	15.66	16.47
KRH71976	Soybean	nucleus	15.38	16.27
KRH40434	Soybean	mitochondrion	15.24	16.15
KRH75280	Soybean	mitochondrion	2.8	15.15
KRH53996	Soybean	plasma membrane	14.55	15.14
KRH63943	Soybean	plastid	14.55	13.87
KRH63330	Soybean	cytosol, plasma membrane	5.03	13.38
KRH00796	Soybean	nucleus	10.35	11.26
KRH63332	Soybean	cytosol	3.78	9.96

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300	Gene3D:3.90.1430.10
MapMan:35.1	EMBL:ACUP02009772	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	EnsemblPlantsGene:GLYMA_15G256800
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	UniProt:I1MJ84	InterPro:IPR000795	InterPro:IPR014721	EnsemblPlants:KRH13692	ProteinID:KRH13692
ProteinID:KRH13692.1	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF14492
PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	UniParc:UPI00023D72D0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:-:48618862..48621265

Molecular Weight (calculated)

80314.1 Da

IEP (calculated)

7.754

GRAVY (calculated)

-0.274

Length

715 amino acids

Sequence
(BLAST)

001: MLRQSGHHIM DRNHNNRNMS VIAHVEHGKS TLIDSLVAAA GIIAQETAGD VRMTDTLQYE AERGITIKSI GISLYYKMQE GDLKSFKGDC KENDFLINLI
101: DSPGHVDFSS EVTAALHVTD GALVVVDCVE GVRVQTETVL RQALGERVKP VLVVNKMDRF FCWLAWMGLY THQLCRDMMS RLWGENFFDS ATRKWTNKHT
201: GVNLKSEEKE LTGKALMKHV MQSWAPASSA LLEMMIYHLP SPARAQQYRV ENLYEGPLDD QYATAIRNCD PEGPLMLYVS KMIPASDKGR FFSFGRVFSG
301: KVSTGLKVRI MGPNYVPGEK KDLYVKSKQE TVEEVLCGNT VAMVGLDHFI TNNATLTNEK EVDAHPIRAM KFSVSPVVSV AVTTRVPSDL PKLEEGLKRL
401: AKSNPMVVCT LPETGEHIIS AAGKLHLEIC LKDLQDDFMN GAEISISDPI LSFRETVLER SCHTVMSKSP NKHNRLYMEA RPMEAGLAEA IDDEKIGPGV
501: DPKNRSKILS EELGWDKDLA LAPMVKDPTW WWILARAYST SMKSKTQLLL GLREHQLEVQ WLVRKCEGCA SRFRGGQIIS TARRACYAAM LTAKPRLLEP
601: VYLVEIQAPE QALGGVYSVL NQKRGHVFEE SQRPGTPLYN VKAYFPVIES SKFNESLRAK TGRKAFPQLV FDHWDMVPSD PLEPGTPAAA LVAKIRRKKS
701: FDVEMRPFFE FEDRL

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.