Factsheet for Os01t0742200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75622	Sorghum	cytosol	36.92	89.97
EES01455	Sorghum	cytosol	91.16	89.32
KXG37185	Sorghum	cytosol	91.04	89.21
KXG37183	Sorghum	cytosol	91.04	89.21
GSMUA_Achr10P...	Banana	cytosol	83.05	88.98
Zm00001d034771_P002	Maize	cytosol	90.8	88.97
Zm00001d012770_P001	Maize	plastid	90.8	88.97
Zm00001d034776_P001	Maize	cytosol	90.56	88.73
Zm00001d034773_P001	Maize	cytosol	90.56	88.73
CDY49975	Canola	cytosol	42.62	88.22
Solyc08g062920.2.1	Tomato	nucleus, plastid	87.89	87.68
KRH43759	Soybean	nucleus	89.47	87.66
KRH13696	Soybean	nucleus	89.35	87.54
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	81.36	87.27
AT1G56070.2	Thale cress	cytosol	88.38	86.6
VIT_19s0027g00760.t01	Wine grape	cytosol	89.35	86.52
CDX90241	Canola	cytosol, extracellular	82.81	86.47
GSMUA_Achr4P01020_001	Banana	cytosol	90.92	86.42
Bra010782.1-P	Field mustard	cytosol	88.14	86.36
CDY40423	Canola	cytosol	80.99	85.01
CDY70516	Canola	cytosol	52.3	84.87
CDY05533	Canola	cytosol	67.07	84.84
Bra010781.1-P	Field mustard	cytosol	56.54	84.6
CDY32072	Canola	cytosol	66.1	84.39
AT3G12915.2	Thale cress	cytosol	79.78	83.63
Bra017279.1-P	Field mustard	cytosol	88.26	83.03
CDY24982	Canola	endoplasmic reticulum, vacuole	83.9	82.7
Bra020542.1-P	Field mustard	cytosol	88.01	76.93
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	40.68	76.71
KRH43761	Soybean	cytosol, nucleus, plastid	18.4	76.0
Os01t0723000-01	Rice	cytosol, nucleus, plasma membrane	77.36	74.91
KRH13693	Soybean	mitochondrion	73.85	73.76
Zm00001d020342_P001	Maize	mitochondrion	35.23	72.93
KRH13692	Soybean	cytosol, mitochondrion	60.05	69.37
CDY70526	Canola	nucleus	6.17	60.0
CDY49974	Canola	nucleus	6.05	58.82
CDY54261	Canola	nucleus	15.01	53.91
Os05t0467501-00	Rice	cytosol	28.09	50.88
Os04t0538166-00	Rice	cytosol, mitochondrion, peroxisome	6.42	37.59
Os06t0608300-01	Rice	nucleus	39.59	32.8
Os02t0543300-00	Rice	mitochondrion	34.02	27.96
Os03t0650700-01	Rice	cytosol	34.75	27.89
Os04t0538100-01	Rice	plasma membrane	11.86	25.39
Os03t0565500-01	Rice	mitochondrion	19.13	20.87
Os01t0752700-01	Rice	mitochondrion	16.71	20.51
Os06t0144800-01	Rice	mitochondrion	15.38	19.16
Os02t0285800-01	Rice	plasma membrane	15.13	18.68

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EntrezGene:4326544	EMBL:AK063421	ProteinID:BAD87897.1	ProteinID:BAF06125.1	ProteinID:BAS74282.1
ncoils:Coil	ProteinID:EAZ13491.1	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	EnsemblPlantsGene:Os01g0742200	EnsemblPlants:Os01t0742200-01	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	UniProt:Q5JKU5	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI00004C2AF6
RefSeq:XP_015627687.1	:	:	:	:	:

Description

Similar to Elongation factor EF-2 (Fragment). (Os01t0742200-01)

Coordinates

chr1:+:30992411..30997180

Molecular Weight (calculated)

92005.5 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.192

Length

826 amino acids

Sequence
(BLAST)

001: MVKFTVEEMR RIMDKKHNIR NMSVVAHVDH GKSTLTDSLV AAAGIIAQDV AGDVRMTDSR SDEAERGITI KSTGISLYYE MSDESLKSYK GDRDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVG GEEAYQTFSR VIENANVIMA TYEDALLGDV
201: QVYPEKGTVA FSAGLHGWAF TLSNFAKMYA SKFGVDESKM MERLWGENYF DPTTKKWTIK HTGSDTCKRG FIQFCYEPIR QIINTCMNDQ KDKLLPMLQK
301: LGVTMKDLTG KALMKRVMQT WLPASNALLE MMIYHLPSPA KAQRYRVENL YEGPLDDIYA SAIRNCDPEG PLMLYVSKMI PASDKGRFYA FGRVFSGRVA
401: TGMKVRIMGP NYAPGQKKDL YVKNVQRTVI WMGKKQESVE GVPCGNTVAM VGLDQFITKN ATLTNEKEVD ACPIKAMKFS VSPVVRVAVQ CKVASDLPKL
501: VEGLKRLAKS DPMVLCTVEE SGEHIIAGAG ELHLEICLKD LQEDFMGGAE ITVSPPVVSF RETVLEKSCR TVMSKSPNKH NRLYMEARPM EEGLPEAIDE
601: GRIGPRDDPK VRSKILSEEF GWDKDLAKKI WCFGPETTGP NIVVDMCKGV QYLNEIKDSV VAGFQWASKE GALAEENMRG RGICFEVCDV ILHSDAIHRG
701: GGQIIPTARR VIYAAQLTAK PRLLEPVYLV EIQAPENALG GIYSVLNQKR GHVFEEMQRP GTPLYNIKAY LPVIESFGFT STLRAATSGQ AFPLFVFDHW
801: EMLSVDPLEP GTRQLTLSWI SARGRV

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.