Factsheet for Solyc08g062910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular, nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49975	Canola	cytosol	48.83	94.24
OQU75622	Sorghum	cytosol	41.17	93.51
Solyc08g062920.2.1	Tomato	nucleus, plastid	99.87	92.87
TraesCS5D01G509800.1	Wheat	cytosol	52.6	90.6
TraesCS2A01G234500.1	Wheat	cytosol	14.42	88.8
TraesCS7A01G288600.1	Wheat	cytosol	14.03	88.52
GSMUA_Achr10P...	Banana	cytosol	88.18	88.07
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	14.29	88.0
KRH43759	Soybean	nucleus	95.32	87.07
KRH13696	Soybean	nucleus	95.19	86.95
VIT_19s0027g00760.t01	Wine grape	cytosol	94.94	85.7
AT1G56070.2	Thale cress	cytosol	93.51	85.41
KXG37185	Sorghum	cytosol	93.51	85.41
KXG37183	Sorghum	cytosol	93.51	85.41
EES01455	Sorghum	cytosol	93.51	85.41
Bra010782.1-P	Field mustard	cytosol	93.51	85.41
CDX90241	Canola	cytosol, extracellular	87.53	85.21
TraesCS3D01G220900.1	Wheat	golgi	93.25	85.17
Zm00001d012770_P001	Maize	plastid	92.99	84.93
TraesCS3A01G232300.1	Wheat	cytosol, golgi	92.99	84.93
Zm00001d034771_P002	Maize	cytosol	92.73	84.7
TraesCS3B01G261500.1	Wheat	cytosol	92.73	84.7
Zm00001d034776_P001	Maize	cytosol	92.73	84.7
Zm00001d034773_P001	Maize	cytosol	92.73	84.7
HORVU3Hr1G057880.1	Barley	cytosol	92.34	84.34
HORVU3Hr1G057890.1	Barley	cytosol	92.34	84.34
TraesCS5B01G509600.1	Wheat	cytosol, golgi	92.34	84.34
TraesCS5D01G509600.1	Wheat	cytosol	92.34	84.34
TraesCS5D01G509700.1	Wheat	cytosol	90.26	84.24
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	92.21	84.22
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	92.21	84.22
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	92.21	84.22
TraesCS7D01G449300.1	Wheat	cytosol	91.82	83.87
TraesCS7B01G362600.1	Wheat	cytosol	91.82	83.87
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	91.69	83.75
HORVU7Hr1G106150.1	Barley	cytosol	91.69	83.75
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	91.43	83.51
TraesCS5B01G509700.1	Wheat	cytosol, golgi	91.3	83.39
CDY05533	Canola	cytosol	70.26	82.85
GSMUA_Achr4P01020_001	Banana	cytosol	93.38	82.74
CDY32072	Canola	cytosol	69.22	82.38
CDY40423	Canola	cytosol	84.16	82.34
Bra017279.1-P	Field mustard	cytosol	93.38	81.89
CDY24982	Canola	endoplasmic reticulum, vacuole	89.09	81.86
Os01t0742200-01	Rice	cytosol, nucleus	87.27	81.36
AT3G12915.2	Thale cress	cytosol	83.12	81.22
Bra010781.1-P	Field mustard	cytosol	57.53	80.25
CDY70516	Canola	cytosol	52.6	79.57
TraesCS4A01G363900.1	Wheat	plastid	66.62	78.08
Bra020542.1-P	Field mustard	cytosol	93.25	75.98
CDY49974	Canola	nucleus	8.31	75.29
CDY70526	Canola	nucleus	8.31	75.29
HORVU5Hr1G116710.1	Barley	cytosol	56.75	74.45
KRH43761	Soybean	cytosol, nucleus, plastid	19.22	74.0
KRH13693	Soybean	mitochondrion	75.84	70.62
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	38.18	67.12
KRH13692	Soybean	cytosol, mitochondrion	59.35	63.92
TraesCS1D01G023700.1	Wheat	cytosol	62.86	57.55
TraesCS1A01G027600.1	Wheat	cytosol	61.95	56.45
TraesCS1D01G026800.1	Wheat	cytosol	49.61	54.89
Zm00001d020342_P001	Maize	mitochondrion	28.31	54.64
TraesCSU01G002600.1	Wheat	cytosol	61.04	54.46
Os05t0467501-00	Rice	cytosol	30.52	51.54
HORVU1Hr1G003960.9	Barley	cytosol	59.87	50.0
TraesCS1B01G033500.1	Wheat	cytosol	24.55	46.9
CDY54261	Canola	nucleus	11.3	37.83
Solyc07g007210.2.1	Tomato	nucleus	37.66	31.35
Solyc11g071770.1.1	Tomato	cytosol	35.97	27.05
Solyc08g079180.2.1	Tomato	plastid	21.3	20.84
Solyc01g090690.2.1	Tomato	plastid	18.96	19.21
Solyc07g053470.2.1	Tomato	mitochondrion	16.23	18.77
Solyc03g058880.2.1	Tomato	mitochondrion	15.45	18.03
Solyc03g058190.2.1	Tomato	plastid	15.71	18.01
Solyc04g015450.2.1	Tomato	nucleus	15.32	17.33

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.870	Gene3D:3.40.50.300	Gene3D:3.90.1430.10
InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721
UniProt:K4CL74	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764
PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	EnsemblPlantsGene:Solyc08g062910.2	EnsemblPlants:Solyc08g062910.2.1	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	UniParc:UPI000276B2C5	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:52321858..52325894

Molecular Weight (calculated)

86002.7 Da

IEP (calculated)

5.434

GRAVY (calculated)

-0.244

Length

770 amino acids

Sequence
(BLAST)

001: MVKFTAEELR RIMDFKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDDSLRNFK GERNGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CVEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFQR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDESKM MERLWGENFF DPATKKWTTK NTGSASCKRG FVQFCYEPIK QIINTCMNDQ KDKLWPMLQK
301: LGVTMKSDEK DLMGKALMKR VMQTWLPAST ALLEMMIYHL PSPSTAQKYR VENLYEGPLD DAYANAIRNC DPEGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYVPGE KKDLYVKNIQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC SIEESGEHII AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVLE KSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDEGRIGPR DDPKVRSKIL AEEFGWDKDL AKKIWCFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRGICFEVC DVVLHSDAYL
701: PVVESFGFSG TLRAATSGQA FPQCVFDHWE MMSSDPLEAG SQAHQLVLDI RKRKGLKDQM TPLSEFEDKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.