Factsheet for TraesCS5D01G509800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49975	Canola	cytosol	78.52	87.97
KRH43761	Soybean	cytosol, nucleus, plastid	32.44	72.5
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	90.6	52.6
TraesCS5B01G509700.1	Wheat	cytosol, golgi	98.88	52.43
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	98.66	52.31
TraesCS7D01G449300.1	Wheat	cytosol	98.43	52.19
TraesCS5D01G509600.1	Wheat	cytosol	98.21	52.08
TraesCS5D01G509700.1	Wheat	cytosol	94.18	51.03
GSMUA_Achr10P...	Banana	cytosol	85.68	49.68
CDY40423	Canola	cytosol	86.58	49.17
Solyc08g062920.2.1	Tomato	nucleus, plastid	90.83	49.03
TraesCS3D01G220900.1	Wheat	golgi	91.72	48.64
KRH43759	Soybean	nucleus	90.6	48.04
KRH13696	Soybean	nucleus	90.6	48.04
Bra010782.1-P	Field mustard	cytosol	90.38	47.92
AT1G56070.2	Thale cress	cytosol	90.38	47.92
AT3G12915.2	Thale cress	cytosol	82.77	46.95
VIT_19s0027g00760.t01	Wine grape	cytosol	89.49	46.89
GSMUA_Achr4P01020_001	Banana	cytosol	90.6	46.61
Bra017279.1-P	Field mustard	cytosol	90.16	45.9
CDX90241	Canola	cytosol, extracellular	80.31	45.39
CDY24982	Canola	endoplasmic reticulum, vacuole	82.77	44.15
Bra020542.1-P	Field mustard	cytosol	89.93	42.54
KRH13693	Soybean	mitochondrion	75.62	40.87
TraesCS1D01G023700.1	Wheat	cytosol	68.01	36.15
CDY05533	Canola	cytosol	51.68	35.38
KRH13692	Soybean	cytosol, mitochondrion	55.93	34.97
CDY32072	Canola	cytosol	49.89	34.47
TraesCS1D01G026800.1	Wheat	cytosol	44.52	28.59
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	27.74	28.31
Bra010781.1-P	Field mustard	cytosol	30.2	24.46
CDY70516	Canola	cytosol	22.15	19.45
TraesCS7D01G376800.1	Wheat	cytosol	32.44	14.59
TraesCS1D01G049600.1	Wheat	cytosol	31.1	14.51
TraesCS5D01G380500.1	Wheat	cytosol	32.44	13.88
TraesCS3D01G291300.1	Wheat	mitochondrion	18.57	12.33
TraesCS7D01G081700.2	Wheat	mitochondrion	18.34	12.31
TraesCS6D01G183500.1	Wheat	plastid	17.9	11.9
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	20.13	11.72
TraesCS7D01G344300.4	Wheat	mitochondrion	20.13	11.54
TraesCS6D01G120800.1	Wheat	plastid	16.78	11.19
CDY70526	Canola	nucleus	0.0	0.0
CDY49974	Canola	nucleus	0.0	0.0
CDY54261	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.300	Gene3D:3.90.1430.10	MapMan:35.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:P-loop_NTPase	PFAM:PF00009	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	SUPFAM:SSF50447	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS5D01G509800	EnsemblPlants:TraesCS5D01G509800.1	InterPro:Transl_B-barrel_sf	TIGR:cd01885	SEG:seg

Description

No Description!

Coordinates

chr5D:+:534864327..534866881

Molecular Weight (calculated)

50351.2 Da

IEP (calculated)

7.388

GRAVY (calculated)

-0.182

Length

447 amino acids

Sequence
(BLAST)

001: MVKFTAEELR GIMDKKNNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLFYQ MTPESLEMYK GDRDGDEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQFE GEEAYQTFSR VIENANVIMA TYEDVLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDEVKM MERLWGENFF DPATKKWTTK NTGTATCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLKK
301: LGVTMKNDEK DLMGKALMKR VMQTWLPASR ALLEMMIFHL PSPSKAQRYR VENLYEGPLD DVYANAIRNC DPDGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GRVATGMKVR IMGPNFVPGQ KKDLYVKSVQ RTVIWMGKKQ EDLVLWT

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.