Factsheet for TraesCS1D01G023700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G509800.1	Wheat	cytosol	36.15	68.01
CDY49975	Canola	cytosol	31.87	67.17
GSMUA_Achr10P...	Banana	cytosol	59.22	64.59
TraesCS3D01G220900.1	Wheat	golgi	63.14	62.99
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	57.55	62.86
TraesCS5D01G509600.1	Wheat	cytosol	62.9	62.75
TraesCS5D01G509700.1	Wheat	cytosol	61.24	62.42
TraesCS7D01G449300.1	Wheat	cytosol	62.54	62.4
TraesCS1D01G026800.1	Wheat	cytosol	51.49	62.21
KRH43759	Soybean	nucleus	61.95	61.8
KRH13696	Soybean	nucleus	61.83	61.68
Solyc08g062920.2.1	Tomato	nucleus, plastid	60.4	61.35
Bra010782.1-P	Field mustard	cytosol	61.47	61.33
AT1G56070.2	Thale cress	cytosol	61.36	61.21
VIT_19s0027g00760.t01	Wine grape	cytosol	62.07	61.2
GSMUA_Achr4P01020_001	Banana	cytosol	62.54	60.53
CDX90241	Canola	cytosol, extracellular	56.72	60.3
CDY40423	Canola	cytosol	56.0	59.85
AT3G12915.2	Thale cress	cytosol	55.89	59.64
Bra010781.1-P	Field mustard	cytosol	38.64	58.88
CDY70516	Canola	cytosol	35.55	58.74
Bra017279.1-P	Field mustard	cytosol	61.24	58.66
CDY24982	Canola	endoplasmic reticulum, vacuole	57.79	58.0
CDY05533	Canola	cytosol	44.0	56.66
CDY32072	Canola	cytosol	43.52	56.57
Bra020542.1-P	Field mustard	cytosol	61.24	54.5
KRH13693	Soybean	mitochondrion	52.2	53.08
KRH13692	Soybean	cytosol, mitochondrion	44.71	52.59
KRH43761	Soybean	cytosol, nucleus, plastid	11.89	50.0
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	25.8	49.54
CDY70526	Canola	nucleus	4.88	48.24
CDY49974	Canola	nucleus	4.76	47.06
Os05t0467501-00	Rice	cytosol	22.35	41.23
CDY54261	Canola	nucleus	10.58	38.7
TraesCS7D01G376800.1	Wheat	cytosol	30.44	25.75
TraesCS1D01G049600.1	Wheat	cytosol	27.23	23.9
TraesCS5D01G380500.1	Wheat	cytosol	29.13	23.45
TraesCS3D01G291300.1	Wheat	mitochondrion	15.58	19.47
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	17.48	19.14
TraesCS7D01G081700.2	Wheat	mitochondrion	14.39	18.17
TraesCS7D01G344300.4	Wheat	mitochondrion	15.81	17.05
TraesCS6D01G183500.1	Wheat	plastid	13.56	16.96
TraesCS6D01G120800.1	Wheat	plastid	12.6	15.82

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540
SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS1D01G023700
EnsemblPlants:TraesCS1D01G023700.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	TIGR:cd04096	TIGR:cd16268
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:10024687..10028594

Molecular Weight (calculated)

92998.6 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.080

Length

841 amino acids

Sequence
(BLAST)

001: MVFSAAELCE AMDKKDNIRN VSIVGHLSHG KSTLADSLIA AAGIIGQEGA VDARMTDTRA DEAERGISIK STGISLLYEM QDESLKAYKG ERDGNRFLMN
101: LIDSPGHVDF SAEVTAALRI TDGAMVIVDC IEGVCVQTET VLRQALGEMV RPVLCLNKMD QLFPGLQGEG VKRELDGEQV YQILNNVIQN ASDIVSACGN
201: GTPHLGDVQF YPDKGNVAFS AGIHDWAFTL PTFAKICAPI LGMEESQMVT KLWGDNFYNH VTKKWTNVKT GSKACQRGFV TFCYNTIEKV IQACMDNQKD
301: ELWRMLHKFG VSINDDDKNL SGVALVKRVM QTWLPASSAL FEMMIFHLPS PLKAQEYRVE NLYEGPLDDI YAEAIRKCDP EGPLMMYVSK MIPASDVGGF
401: FAFGRVFSGK VETGMKVRIM GPSYVSGMKR DLYVKRVERT VIWMGRDQDG VGYASCGNLV GMVGLDECII KGATLTSQEE VDACPIRAMK FSVSPVMYVT
501: VECKPLSDIP KFTQGMKRLE KSDLVVFCSQ VGQRTYTVAG AGELHLEICL NDLRGCFLDG AQVEVSGPMV CLCETVLDKS CNVQSKSRNG HNSLTMVACP
601: LDEKLVQAID DGLLGPCTDH KVRSKILGES GWDVSLSDKI LCFGPNNRGP NIVLDMCKGR SDLNLLKETL VECFQMASVE GALIAERMRG ICFEIHDVVQ
701: HTSEKFSHTK NQLIPMIKEA INDCQLKANP RLLEPVYMVE IQAPESALEI IYGILNQKMS HVFQHFQREG TQLFILRSYL NVGESFGFAE DFRAATSGEV
801: TPQCVLDHWD TLSSDPLMRN SLSWGMVLDI RKAKKLSPLQ S

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.