Factsheet for TraesCS1D01G049600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G062700.1	Wheat	cytosol	95.82	91.25
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	93.01	90.0
HORVU1Hr1G009320.1	Barley	nucleus	68.68	73.6
TraesCS5D01G380500.1	Wheat	cytosol	61.48	56.36
KXG30393	Sorghum	nucleus	51.88	56.35
Os02t0543300-00	Rice	mitochondrion	57.2	54.53
CDY10337	Canola	cytosol	26.41	53.38
CDY32224	Canola	cytosol	26.51	49.32
KRH40894	Soybean	cytosol	17.75	49.13
CDY10688	Canola	cytosol	43.22	47.48
KRG94823	Soybean	cytosol	50.0	46.87
Solyc11g071770.1.1	Tomato	cytosol	50.0	46.78
PGSC0003DMT400007735	Potato	cytosol	49.9	46.73
VIT_04s0044g01790.t01	Wine grape	cytosol	50.1	46.6
AT3G22980.2	Thale cress	cytosol	48.96	46.21
GSMUA_Achr2P17400_001	Banana	cytosol	39.25	45.63
Bra033543.1-P	Field mustard	cytosol	41.13	43.3
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	20.15	40.12
CDY32225	Canola	nucleus	13.47	36.44
TraesCS5D01G509600.1	Wheat	cytosol	27.45	31.2
TraesCS5D01G509700.1	Wheat	cytosol	26.83	31.15
TraesCS5D01G509800.1	Wheat	cytosol	14.51	31.1
TraesCS3D01G220900.1	Wheat	golgi	27.35	31.08
TraesCS7D01G449300.1	Wheat	cytosol	27.14	30.84
TraesCS1D01G026800.1	Wheat	cytosol	20.35	28.02
TraesCS1D01G023700.1	Wheat	cytosol	23.9	27.23
TraesCS7D01G376800.1	Wheat	cytosol	24.22	23.34
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	15.97	19.92
TraesCS3D01G291300.1	Wheat	mitochondrion	12.94	18.43
TraesCS7D01G344300.4	Wheat	mitochondrion	14.82	18.21
TraesCS7D01G081700.2	Wheat	mitochondrion	12.42	17.87
TraesCS6D01G183500.1	Wheat	plastid	11.8	16.82
TraesCS6D01G120800.1	Wheat	plastid	11.38	16.27

Protein Annotations

MapMan:17.1.2.2.3.4	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	ncoils:Coil	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:IPR000795	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF14492	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF12	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
InterPro:TF_GTP-bd_dom	EnsemblPlantsGene:TraesCS1D01G049600	EnsemblPlants:TraesCS1D01G049600.1	InterPro:Transl_B-barrel_sf	TIGR:cd01681	TIGR:cd04096
TIGR:cd16268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:29837177..29840540

Molecular Weight (calculated)

105072.0 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.103

Length

958 amino acids

Sequence
(BLAST)

001: MVVAAAGDPR RVRNTCIMAH VDHGKTTLAD HLVAYGGGGL LNPSMAGKAR FMDHLREEQE RAITMKSTAV LLRHRDGTRV HLIDSPGHAD FCSEVSAAAR
101: VADSALIVVD AVDGLGVQTH AALRKAFAER LRPCLVLNKL DRLITDLRLD PGEAYERLRR IVAEANSVYS TLRSGSYFSL LDGPAPAQQA DDGEDAFVPQ
201: KGNVVFGCAR DGWGFRIQDF ASVMAMGRPG QASKLVEWLW GAYYWDKEKK KAMSLANGMK QQPMFVEFVL KRLWKVYDHG LKVDGASWLH DHVVQTFNLK
301: VSERELQSRD RPKAALEAVM RAWLPLAETV MTMIVECTPD PVAAQGFRAP ALMPEKELPT WVSAEHAGIV AEAEKVRRCV VACSASSSDP VVVFVSKMFV
401: VKQKDLPPTL NHVQEAAGEP EECFLAFARV FSGVLHAGQK VFVLSPMYDP VKGDTTGKHL KEVEVQQLYE MLGEGLRPVA SVGTGNVAAI KGLGEHIMKT
501: ATLSSMRNCW PFASMAFQVS PILKVTVEPA NVADLAAFRE GLSLLNRADP LVEYSISEKG EHVLAAAGKV HLEHCVKNLR ERFAKVELNV SEPLVSFKET
601: IQGEGAGLID SLKDPQGYVE RIAPDGKFAV RVKVIRLPDA LVKVLEENEE LLSRTIKGQT TRSVGAIGSQ CPWDDDGRSV AVLRQDMLTA VESELEALSA
701: REDEVKLESY RKALLGYLHK IWALGPSQVG PNLLLMPGVK LSSGLTTIQN RREGILVRGR CHVSEKLGFV SVSDDAEISN GIIDDSGPST DVPDPEALRN
801: IIISGFQEVT NAGPLCDEPM WGLAFIVEPY IFSGSPDSVN CSYQHKAAVR EACRAAVLQS KPRLVEPMYF CEVTTPIERL GSVYSVLGDC RAKVQEAEMQ
901: LETFLYMVHA HLPVAESSEF SEKLWNGSSG AATARLTFSH WEAIPQDPFF VPKTKEEI

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.