Factsheet for TraesCS3D01G220900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G261500.1	Wheat	cytosol	99.53	99.53
TraesCS3A01G232300.1	Wheat	cytosol, golgi	99.53	99.53
HORVU3Hr1G057890.1	Barley	cytosol	98.58	98.58
HORVU3Hr1G057880.1	Barley	cytosol	98.58	98.58
TraesCS5D01G509700.1	Wheat	cytosol	92.65	94.67
TraesCS5D01G509600.1	Wheat	cytosol	94.66	94.66
TraesCS7D01G449300.1	Wheat	cytosol	93.83	93.83
GSMUA_Achr10P...	Banana	cytosol	85.77	93.77
Solyc08g062920.2.1	Tomato	nucleus, plastid	91.7	93.36
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	85.17	93.25
KRH43759	Soybean	nucleus	93.0	93.0
KRH13696	Soybean	nucleus	92.88	92.88
VIT_19s0027g00760.t01	Wine grape	cytosol	93.59	92.5
CDY49975	Canola	cytosol	43.65	92.23
CDX90241	Canola	cytosol, extracellular	86.24	91.91
TraesCS5D01G509800.1	Wheat	cytosol	48.64	91.72
AT1G56070.2	Thale cress	cytosol	91.46	91.46
Bra010782.1-P	Field mustard	cytosol	91.46	91.46
CDY05533	Canola	cytosol	70.7	91.27
CDY32072	Canola	cytosol	69.75	90.88
CDY70516	Canola	cytosol	54.8	90.77
GSMUA_Achr4P01020_001	Banana	cytosol	93.48	90.68
Bra010781.1-P	Field mustard	cytosol	59.07	90.22
AT3G12915.2	Thale cress	cytosol	83.04	88.83
CDY40423	Canola	cytosol	81.97	87.8
CDY24982	Canola	endoplasmic reticulum, vacuole	87.19	87.71
Bra017279.1-P	Field mustard	cytosol	91.22	87.59
CDY49974	Canola	nucleus	8.78	87.06
CDY70526	Canola	nucleus	8.78	87.06
Bra020542.1-P	Field mustard	cytosol	91.34	81.48
KRH43761	Soybean	cytosol, nucleus, plastid	18.51	78.0
KRH13693	Soybean	mitochondrion	74.85	76.3
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	39.5	76.03
KRH13692	Soybean	cytosol, mitochondrion	60.14	70.91
CDY54261	Canola	nucleus	17.79	65.22
TraesCS1D01G023700.1	Wheat	cytosol	62.99	63.14
TraesCS1D01G026800.1	Wheat	cytosol	50.65	61.35
TraesCS7D01G376800.1	Wheat	cytosol	37.96	32.19
TraesCS5D01G380500.1	Wheat	cytosol	34.28	27.66
TraesCS1D01G049600.1	Wheat	cytosol	31.08	27.35
TraesCS2D01G383800.1	Wheat	mitochondrion, plastid	21.23	23.31
TraesCS7D01G344300.4	Wheat	mitochondrion	18.86	20.38
TraesCS3D01G291300.1	Wheat	mitochondrion	16.01	20.06
TraesCS7D01G081700.2	Wheat	mitochondrion	15.42	19.52
TraesCS6D01G120800.1	Wheat	plastid	15.07	18.96
TraesCS6D01G183500.1	Wheat	plastid	14.95	18.75

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS
InterPro:IPR000795	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF14492	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908
PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447
SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS3D01G220900	EnsemblPlants:TraesCS3D01G220900.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	TIGR:cd01885
TIGR:cd04096	TIGR:cd16261	TIGR:cd16268	:	:	:

Description

No Description!

Coordinates

chr3D:-:301440590..301445553

Molecular Weight (calculated)

93809.6 Da

IEP (calculated)

6.029

GRAVY (calculated)

-0.200

Length

843 amino acids

Sequence
(BLAST)

001: MVKFTVEGLR IIMDKQNNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLFYE MTDESLRAYK GERDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDAKLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVDESKM MERLWGENFF DTATKKWTNK NTGSPTCKRG FVQFCYDPIK QIINTCMNDQ KDKLWPMLQK
301: LGVTMKADEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPSKAQKYR VENLYEGPLD DVYATAIRNC DPEGPLMLYV SKMIPASDKG RFFAFGRVFS
401: GRIATGMKVR IMGPNYVPGQ KKDLYVKSVQ RTVIWMGKKQ ESVDDVPCGN TVAMVGLDQF ITKNATLTNE KEVDACPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC SMEESGEHII AGAGELHLEI CLKDLQEDFM GGAEIIVSPP VVSFRETVLE KSCRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKVRSKVL SEEFGWDKDL AKKIWCFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRGICFEVC DVVLHTDAIH
701: RGGGQVIPTA RRVIYASQLT AKPRLLEPVY LVEIQAPENA LGGIYGVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVIESFG FSGTLRAATS GQAFPQCVFD
801: HWDMMSADPL EAGSQAAQLV LDIRKRKGLK EQMTPLSEFE DKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.