Factsheet for Bra017279.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010782.1-P	Field mustard	cytosol	95.44	99.41
Bra010781.1-P	Field mustard	cytosol	62.3	99.09
CDY32072	Canola	cytosol	73.01	99.07
AT1G56070.2	Thale cress	cytosol	92.6	96.44
CDY40423	Canola	cytosol	85.08	94.92
KRH13696	Soybean	nucleus	90.09	93.83
Solyc08g062920.2.1	Tomato	nucleus, plastid	88.27	93.6
KRH43759	Soybean	nucleus	89.75	93.48
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	81.89	93.38
GSMUA_Achr10P...	Banana	cytosol	81.09	92.35
AT3G12915.2	Thale cress	cytosol	82.8	92.26
KXG37185	Sorghum	cytosol	88.27	91.93
KXG37183	Sorghum	cytosol	88.27	91.93
EES01455	Sorghum	cytosol	88.27	91.93
VIT_19s0027g00760.t01	Wine grape	cytosol	89.29	91.91
Zm00001d034776_P001	Maize	cytosol	88.15	91.81
Zm00001d034773_P001	Maize	cytosol	88.15	91.81
Zm00001d012770_P001	Maize	plastid	88.15	91.81
OQU75622	Sorghum	cytosol	35.42	91.74
Zm00001d034771_P002	Maize	cytosol	87.93	91.58
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	87.81	91.46
TraesCS3A01G232300.1	Wheat	cytosol, golgi	87.7	91.34
TraesCS5D01G509700.1	Wheat	cytosol	85.76	91.27
TraesCS5D01G509600.1	Wheat	cytosol	87.59	91.22
TraesCS5B01G509600.1	Wheat	cytosol, golgi	87.59	91.22
TraesCS5B01G509500.1	Wheat	cytosol, golgi, nucleus	87.59	91.22
HORVU5Hr1G116580.1	Barley	cytosol, plasma membrane	87.59	91.22
TraesCS3D01G220900.1	Wheat	golgi	87.59	91.22
TraesCS3B01G261500.1	Wheat	cytosol	87.47	91.1
TraesCS7D01G449300.1	Wheat	cytosol	87.47	91.1
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	87.36	90.98
TraesCS7B01G362600.1	Wheat	cytosol	87.36	90.98
HORVU7Hr1G106150.1	Barley	cytosol	87.36	90.98
TraesCS5B01G509700.1	Wheat	cytosol, golgi	87.24	90.87
HORVU3Hr1G057880.1	Barley	cytosol	87.24	90.87
HORVU3Hr1G057890.1	Barley	cytosol	87.24	90.87
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	87.24	90.87
TraesCS5D01G509800.1	Wheat	cytosol	45.9	90.16
GSMUA_Achr4P01020_001	Banana	cytosol	88.38	89.3
Bra020542.1-P	Field mustard	cytosol	95.67	88.89
Os01t0742200-01	Rice	cytosol, nucleus	83.03	88.26
TraesCS4A01G363900.1	Wheat	plastid	65.38	87.37
TraesCS2A01G234500.1	Wheat	cytosol	12.3	86.4
TraesCS7A01G288600.1	Wheat	cytosol	11.96	86.07
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	12.19	85.6
HORVU5Hr1G116710.1	Barley	cytosol	56.61	84.67
KRH43761	Soybean	cytosol, nucleus, plastid	17.88	78.5
KRH13693	Soybean	mitochondrion	72.21	76.66
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	37.81	75.8
KRH13692	Soybean	cytosol, mitochondrion	58.88	72.31
Zm00001d020342_P001	Maize	mitochondrion	32.46	71.43
TraesCS1D01G023700.1	Wheat	cytosol	58.66	61.24
TraesCS1A01G027600.1	Wheat	cytosol	56.72	58.93
TraesCS1D01G026800.1	Wheat	cytosol	46.36	58.48
TraesCSU01G002600.1	Wheat	cytosol	56.49	57.47
TraesCS1B01G033500.1	Wheat	cytosol	24.6	53.6
HORVU1Hr1G003960.9	Barley	cytosol	55.01	52.39
Os05t0467501-00	Rice	cytosol	26.08	50.22
Bra024798.1-P	Field mustard	cytosol	37.36	33.33
Bra030642.1-P	Field mustard	cytosol	37.47	33.33
Bra033543.1-P	Field mustard	cytosol	30.18	29.12
Bra033895.1-P	Field mustard	cytosol, nucleus, plastid	14.81	27.03
Bra027021.1-P	Field mustard	plastid	20.16	22.84
Bra004884.1-P	Field mustard	plastid	18.22	21.19
Bra022824.1-P	Field mustard	mitochondrion	15.15	21.08
Bra021694.1-P	Field mustard	mitochondrion	15.15	20.4
Bra028444.1-P	Field mustard	mitochondrion	14.01	18.61
Bra008811.1-P	Field mustard	plastid	13.9	18.1
Bra028651.1-P	Field mustard	plastid	14.01	17.98

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	EnsemblPlantsGene:Bra017279	EnsemblPlants:Bra017279.1	EnsemblPlants:Bra017279.1-P	InterPro:EFG_III/V	InterPro:EFG_V-like
InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:G_TR_CS	InterPro:IPR000795	InterPro:IPR014721	UniProt:M4DL98
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF00679	PFAM:PF03144	PFAM:PF03764	PFAM:PF14492
PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211
SUPFAM:SSF54980	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00231	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV
UniParc:UPI0002543E60	:	:	:	:	:

Description

AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding

Coordinates

chrA04:-:15576901..15579707

Molecular Weight (calculated)

97894.3 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.241

Length

878 amino acids

Sequence
(BLAST)

001: MVKFTSDELR RIMDYKHNIR NMSVIAHVDH GGKSTLTDSL VAAAGIIAQE VAGDVRMTDT RADEAERGIT IKSTGISLYY EMTDASLKSF TGARDGNEYL
101: INLIDSPGHV DFSSEVTAAL RITDGALVVV DCIEGVCVQT ETVLRQALGE RIRPVLTVNK MDRCFLELQV DGEEAYQTFQ RVIENANVIM ATYEDPLLGD
201: VQVYPEKGTV AFSAGLHGWA FTLTNFAKMY ASKFGVDETK MMERLWGENF FDPATRKWSG KNTGSATCKR GFVQFCYEPI KQIIATCMND QKDKLNTGSA
301: TCKRGFVQFC YEPIKQIIAT CMNDQKDKLW PMLQKLGVQM KSDEKELMGK PLMKRVMQTW LPASTALLEM MIFHLPSPHT AQRYRVENLY EGPLDDQYAT
401: AIRNCDPNGP LMLYVSKMIP ASDKGRFFAF GRVFSGKVST GMKVRIMGPN FVPGEKKDLY VKSVQRTVIW MGKRQETVED VPCGNTVAMV GLDQFITKNA
501: TLTNEKEVDA HPIRAMKFSV SPVVRVAVQC KVASDLPKLV EGLKRLAKSD PMVVCTMEES GEHIVAGAGE LHLEICLKDL QDDFMGGAEI VKSDPVVSFR
601: ETVLERSVRT VMSKSPNKHN RLYMEARPLE DGLAEAIDEG RIGPRDDPKI RSKILAEEFG WDKDLAKKIW AFGPETTGPN MVVDMCKGVQ YLNEIKDSVV
701: AGFQWASKEG PLCDENMRGI CFEVCDVVLH SDAIHRGGGQ VIPTARRVIY ASQLTAKPRL LEPVYMVEIQ APEGALGGIY SVLNQKRGHV FEEMQRPGTP
801: LYNIKAYLPV VESFGFSSQL RAATSGQAFP QCVFDHWEMM SSDPLETGSQ ASTLVADIRK RKGMKEQMTP LSDFEDKL

Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)

001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL

Arabidopsis Description

LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.