Factsheet for TraesCS4A01G363900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G234500.1	Wheat	cytosol	17.66	92.8
TraesCS7A01G288600.1	Wheat	cytosol	17.2	92.62
TraesCS6A01G189500.1	Wheat	cytosol, nucleus, plastid	17.35	91.2
CDY70516	Canola	cytosol	70.32	90.77
Bra010781.1-P	Field mustard	cytosol	72.45	86.23
CDY49974	Canola	nucleus	10.96	84.71
CDY70526	Canola	nucleus	10.81	83.53
CDY05533	Canola	cytosol	81.89	82.39
CDY32072	Canola	cytosol	80.97	82.23
TraesCS7A01G461100.1	Wheat	cytosol, nucleus, unclear	96.65	75.33
TraesCS4A01G363700.1	Wheat	cytosol, golgi, unclear	96.04	74.85
TraesCS4A01G363800.1	Wheat	cytosol, nucleus, plastid	95.89	74.73
TraesCS3A01G232300.1	Wheat	cytosol, golgi	89.95	70.11
KRH43759	Soybean	nucleus	89.19	69.51
KRH13696	Soybean	nucleus	89.04	69.39
CDX90241	Canola	cytosol, extracellular	83.41	69.28
Solyc08g062920.2.1	Tomato	nucleus, plastid	86.61	68.72
Bra010782.1-P	Field mustard	cytosol	87.82	68.45
VIT_19s0027g00760.t01	Wine grape	cytosol	88.43	68.11
AT1G56070.2	Thale cress	cytosol	87.21	67.97
GSMUA_Achr10P...	Banana	cytosol	79.76	67.96
GSMUA_Achr4P01020_001	Banana	cytosol	88.89	67.2
Solyc08g062910.2.1	Tomato	cytosol, extracellular, nucleus, unclear	78.08	66.62
Bra017279.1-P	Field mustard	cytosol	87.37	65.38
CDY40423	Canola	cytosol	77.93	65.06
CDY24982	Canola	endoplasmic reticulum, vacuole	82.34	64.56
AT3G12915.2	Thale cress	cytosol	76.71	63.96
CDY54261	Canola	nucleus	22.22	63.48
Bra020542.1-P	Field mustard	cytosol	87.52	60.85
KRH13693	Soybean	mitochondrion	73.06	58.04
GSMUA_Achr6P22520_001	Banana	endoplasmic reticulum, extracellular, vacuole	37.44	56.16
KRH13692	Soybean	cytosol, mitochondrion	58.75	53.99
CDY49975	Canola	cytosol	28.92	47.62
TraesCS1A01G027600.1	Wheat	cytosol	57.23	44.5
KRH43761	Soybean	cytosol, nucleus, plastid	11.42	37.5
TraesCS7A01G380300.1	Wheat	nucleus	36.38	24.04
TraesCS5A01G370800.1	Wheat	cytosol	31.51	19.81
TraesCS1A01G048300.1	Wheat	mitochondrion, nucleus, plastid	27.85	18.48
TraesCS2A01G387000.1	Wheat	mitochondrion, plastid	18.42	15.76
TraesCS7A01G336600.4	Wheat	mitochondrion	15.07	12.69
TraesCS3A01G291600.1	Wheat	mitochondrion	10.5	10.25
TraesCS6A01G130900.1	Wheat	plastid	10.2	10.0
TraesCS6A01G192800.1	Wheat	plastid	10.2	9.94
TraesCS4A01G386100.3	Wheat	mitochondrion	9.89	9.76
TraesCS7A01G087200.1	Wheat	mitochondrion	9.89	9.76

Protein Annotations

MapMan:17.5.2.1	Gene3D:2.40.30.10	Gene3D:3.30.230.10	Gene3D:3.30.70.240	Gene3D:3.30.70.870	Gene3D:3.40.50.300
Gene3D:3.90.1430.10	InterPro:EFG_III/V	InterPro:EFG_V-like	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	InterPro:IPR014721	InterPro:P-loop_NTPase	PFAM:PF00679	PFAM:PF03144
PFAM:PF03764	PFAM:PF14492	PANTHER:PTHR42908	PANTHER:PTHR42908:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
SMART:SM00838	SMART:SM00889	SUPFAM:SSF50447	SUPFAM:SSF52540	SUPFAM:SSF54211	SUPFAM:SSF54980
EnsemblPlantsGene:TraesCS4A01G363900	EnsemblPlants:TraesCS4A01G363900.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EFG/EF2_IV	TIGR:cd01681	TIGR:cd04096
TIGR:cd16261	TIGR:cd16268	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:636962452..636964425

Molecular Weight (calculated)

73542.0 Da

IEP (calculated)

8.582

GRAVY (calculated)

-0.220

Length

657 amino acids

Sequence
(BLAST)

001: MPMSSWQHMK MCSLVMSKCT RRRGLLRSLL VCMGGLTNFA KMYASKFGVD EAKMMERLWG ENFFDPATKK WTSKNTGTAT CKRGFVQFCY EPIKQIIATC
101: MNDQKDKLWP MLKKLGVTMK NDEKDLMGKA LMKRVMQTWL PASRALLEMM IFHLPSPSKA QRYRVENLYE GPLDDIYANA IRNCDPDGPL MLYVSKMIPA
201: SDKGRFFAFG RVFAGRVATG MKVRIMGPNF VPGQKKDLYV KSVQRTVIWM GKKQESVEDV PCGNTVALVG LDQFITKNAT LTNEKEVDAC PIRAMKFSVS
301: PVVRVAVQCK VASDLPKLVE GLKRLAKSDP MVLCTIEESG EHIIAGAGEL HLEICLKDLQ DDFMGGAEII VSPPVVSFRE TVLEKSCRTV MSKSPNKHNR
401: LYMEARPLEE GLAEAIDDGR IGPRDDPKVR SKILSEEFGW DKDLAKKIWC FGPETTGPNM VVDMCKGVQY LNEIKDSVVA GFQWASKEGA LAEENMRGIC
501: FEVCDVVLHT DAIHRGGGQV IPTARRVIYA SQLTAKPRLL EPVYLVEIQA PENALGGIYG VLNQKRGHVF EEMQRQGTPL YNIKAYLPVI ESFGFSSTLR
601: AATSGQAFPQ CVFDHWDIMA SDPLDPGTQS ATLVTEIRKR KGLKEQMTPL SDFEDKL

Best Arabidopsis Sequence Match ( AT1G06220.2 )
(BLAST)

001: MESSLYDEFG NYVGPEIESD RDSDDEVEDE DLQDKHLEEN GSDGEQGPGG SNGWITTIND VEMENQIVLP EDKKYYPTAE EVYGEDVETL VMDEDEQPLE
101: QPIIKPVRDI RFEVGVKDQA TYVSTQFLIG LMSNPALVRN VALVGHLQHG KTVFMDMLVE QTHHMSTFNA KNEKHMKYTD TRVDEQERNI SIKAVPMSLV
201: LEDSRSKSYL CNIMDTPGHV NFSDEMTASL RLADGAVLIV DAAEGVMVNT ERAIRHAIQD HLPIVVVINK VDRLITELKL PPRDAYYKLR HTIEVINNHI
301: SAASTTAGDL PLIDPAAGNV CFASGTAGWS FTLQSFAKMY AKLHGVAMDV DKFASRLWGD VYYHSDTRVF KRSPPVGGGE RAFVQFILEP LYKIYSQVIG
401: EHKKSVETTL AELGVTLSNS AYKLNVRPLL RLACSSVFGS ASGFTDMLVK HIPSPREAAA RKVDHSYTGT KDSPIYESMV ECDPSGPLMV NVTKLYPKSD
501: TSVFDVFGRV YSGRLQTGQS VRVLGEGYSP EDEEDMTIKE VTKLWIYQAR YRIPVSSAPP GSWVLIEGVD ASIMKTATLC NASYDEDVYI FRALQFNTLP
601: VVKTATEPLN PSELPKMVEG LRKISKSYPL AITKVEESGE HTILGTGELY LDSIMKDLRE LYSEVEVKVA DPVVSFCETV VESSSMKCFA ETPNKKNKIT
701: MIAEPLDRGL AEDIENGVVS IDWNRKQLGD FFRTKYDWDL LAARSIWAFG PDKQGPNILL DDTLPTEVDR NLMMAVKDSI VQGFQWGARE GPLCDEPIRN
801: VKFKIVDARI APEPLHRGSG QMIPTARRVA YSAFLMATPR LMEPVYYVEI QTPIDCVTAI YTVLSRRRGH VTSDVPQPGT PAYIVKAFLP VIESFGFETD
901: LRYHTQGQAF CLSVFDHWAI VPGDPLDKAI QLRPLEPAPI QHLAREFMVK TRRRKGMSED VSGNKFFDEA MMVELAQQTG DLHLQMI

Arabidopsis Description

CLO110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.